ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
57,301
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 24,159 | 42.161567860945% | — | — | — |
| B cells | 22,170 | 38.690424250886% | — | — | — |
| Erythroid cells | 1,626 | 2.8376468124466% | — | — | — |
| Natural killer T cells | 1,583 | 2.7626044920682% | — | — | — |
| Plasma B cells | 1,128 | 1.9685520322507% | — | — | — |
| Monocytes | 1,013 | 1.7678574544947% | — | — | — |
| Natural killer cells | 976 | 1.7032861555645% | — | — | — |
| Cycling B cells | 626 | 1.0924765710895% | — | — | — |
| Macrophages | 544 | 0.94937261129823% | — | — | — |
| Dendritic cells | 465 | 0.81150416223103% | — | — | — |
| Neutrophils | 282 | 0.49213800806269% | — | — | — |
| Common myeloid progenitors | 260 | 0.45374426275283% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 186 | 0.32460166489241% | — | — | — |
| Common lymphoid progenitors | 24 | 0.041884085792569% | — | — | — |
| Mast cells | 18 | 0.031413064344427% | — | — | — |
| Basal cells | 651 | 1.1361058271234% | — | — | — |
| Progenitor-like epithelial cells | 58 | 0.10121987399871% | — | — | — |
| Other stromal cells | 437 | 0.76263939547303% | — | — | — |
| Type II myonuclei | 429 | 0.74867803354217% | — | — | — |
| Smooth muscle cells | 412 | 0.7190101394391% | — | — | — |
| Endothelial cells | 254 | 0.44327324130469% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 24159 | 42.1616 | Immune cells | #D4E157 |
| celltype | B cells | 22170 | 38.6904 | Immune cells | #2E7D32 |
| celltype | Erythroid cells | 1626 | 2.8376 | Immune cells | #4CAF50 |
| celltype | Natural killer T cells | 1583 | 2.7626 | Immune cells | #FF1493 |
| celltype | Plasma B cells | 1128 | 1.9686 | Immune cells | #42A5F5 |
| celltype | Monocytes | 1013 | 1.7679 | Immune cells | #7E57C2 |
| celltype | Natural killer cells | 976 | 1.7033 | Immune cells | #DB7093 |
| celltype | Basal cells | 651 | 1.1361 | Epithelial cells | #78909C |
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