ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys03
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys03/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
33,191
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
10
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Glial cells | 68 | 0.20487481546202% | — | — | — |
| Macrophages | 2,476 | 7.4598535747642% | — | — | — |
| T cells | 138 | 0.41577536079058% | — | — | — |
| Adventitial cells | 3,745 | 11.283179175078% | — | — | — |
| Adipocytes | 1,800 | 5.4231568798771% | — | — | — |
| Other stromal cells | 899 | 2.7085655750053% | — | — | — |
| Pericytes | 187 | 0.56340574252056% | — | — | — |
| Smooth muscle cells | 9,708 | 29.248892772137% | — | — | — |
| Cardiomyocytes | 5,802 | 17.480642342804% | — | — | — |
| Endothelial cells | 8,368 | 25.211653761562% | — | — | — |
10 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Smooth muscle cells | 9708 | 29.2489 | Muscle cells | #5C6BC0 |
| celltype | Endothelial cells | 8368 | 25.2117 | Endothelial cells | #BA68C8 |
| celltype | Cardiomyocytes | 5802 | 17.4806 | Muscle cells | #FF7043 |
| celltype | Adventitial cells | 3745 | 11.2832 | Stromal cells | #8FBC8F |
| celltype | Macrophages | 2476 | 7.4599 | Immune cells | #5C6BC0 |
| celltype | Adipocytes | 1800 | 5.4232 | Stromal cells | #42A5F5 |
| celltype | Other stromal cells | 899 | 2.7086 | Stromal cells | #008B8B |
| celltype | Pericytes | 187 | 0.5634 | Stromal cells | #4CAF50 |
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