ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys04
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys04/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
85,738
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
23
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 7,765 | 9.0566609904593% | — | — | — |
| T cells | 5,886 | 6.8651006554853% | — | — | — |
| Club cells | 2,056 | 2.3980032191094% | — | — | — |
| Goblet cells | 1,457 | 1.6993631761879% | — | — | — |
| Dendritic cells | 331 | 0.38605985677296% | — | — | — |
| Mast cells | 18 | 0.020994191606989% | — | — | — |
| Alveolar type 1 cells | 20,027 | 23.358370850731% | — | — | — |
| Ciliated cells | 5,763 | 6.7216403461709% | — | — | — |
| Alveolar type 2 cells | 5,583 | 6.511698430101% | — | — | — |
| Serous cells | 1,975 | 2.3035293568779% | — | — | — |
| Basal cells | 830 | 0.96806550187781% | — | — | — |
| Cycling ciliated cells | 66 | 0.076978702558959% | — | — | — |
| Neuroendocrine cells | 26 | 0.030324943432317% | — | — | — |
| Mesothelial cells | 2,229 | 2.5997807273321% | — | — | — |
| Other stromal cells | 1,588 | 1.8521542373277% | — | — | — |
| Fibroblasts | 946 | 1.1033614033451% | — | — | — |
| Adipocytes | 419 | 0.48869812685157% | — | — | — |
| Type II myonuclei | 15,619 | 18.217126594975% | — | — | — |
| Type I myonuclei | 4,051 | 4.7248594555506% | — | — | — |
| Smooth muscle cells | 177 | 0.20644288413539% | — | — | — |
| Satellite cells | 148 | 0.17261890876857% | — | — | — |
| Neuromuscular junctions | 66 | 0.076978702558959% | — | — | — |
| Endothelial cells | 8,712 | 10.161188737783% | — | — | — |
23 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Alveolar type 1 cells | 20027 | 23.3584 | Epithelial cells | #FFA726 |
| celltype | Type II myonuclei | 15619 | 18.2171 | Muscle cells | #BC8F8F |
| celltype | Endothelial cells | 8712 | 10.1612 | Endothelial cells | #BA68C8 |
| celltype | Macrophages | 7765 | 9.0567 | Immune cells | #5C6BC0 |
| celltype | T cells | 5886 | 6.8651 | Immune cells | #D4E157 |
| celltype | Ciliated cells | 5763 | 6.7216 | Epithelial cells | #FFCA28 |
| celltype | Alveolar type 2 cells | 5583 | 6.5117 | Epithelial cells | #AB47BC |
| celltype | Type I myonuclei | 4051 | 4.7249 | Muscle cells | #D2B48C |
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