ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
328,557
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
49
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 1,250 | 0.38045148939149% | — | — | — |
| Astrocytes | 512 | 0.15583293005475% | — | — | — |
| Enteric neuronal progenitor cells | 233 | 0.070916157622574% | — | — | — |
| Chromaffin cells | 120 | 0.036523342981583% | — | — | — |
| Enteric neurons | 120 | 0.036523342981583% | — | — | — |
| Schwann cells | 113 | 0.034392814640991% | — | — | — |
| T cells | 20,908 | 6.3635837921578% | — | — | — |
| B cells | 6,821 | 2.0760476873115% | — | — | — |
| Monocytes | 6,278 | 1.9107795603198% | — | — | — |
| Plasma B cells | 6,273 | 1.9092577543623% | — | — | — |
| Goblet cells | 3,184 | 0.96908603377801% | — | — | — |
| Dendritic cells | 2,569 | 0.78190390099739% | — | — | — |
| Kupffer cells | 2,509 | 0.7636422295066% | — | — | — |
| Cycling B cells | 1,832 | 0.55758970285217% | — | — | — |
| Macrophages | 1,585 | 0.48241248854841% | — | — | — |
| Pancreas islet cells | 1,407 | 0.42823619645906% | — | — | — |
| Natural killer T cells | 1,033 | 0.31440511083313% | — | — | — |
| Natural killer cells | 460 | 0.14000614809607% | — | — | — |
| Cycling T cells | 265 | 0.080655715750996% | — | — | — |
| Mast cells | 132 | 0.040175677279741% | — | — | — |
| Acinar cells | 91,947 | 27.985098476064% | — | — | — |
| Hepatocytes | 72,703 | 22.127971706584% | — | — | — |
| Glandular cells | 14,092 | 4.2890579108039% | — | — | — |
| Mucous cells | 12,712 | 3.8690394665157% | — | — | — |
| Enterocytes | 9,351 | 2.8460815018399% | — | — | — |
| Taste cells | 7,171 | 2.1825741043411% | — | — | — |
| Serous cells | 6,819 | 2.0754389649285% | — | — | — |
| Cycling epithelial cells | 4,176 | 1.2710123357591% | — | — | — |
| Squamous cells | 2,866 | 0.87229917487681% | — | — | — |
| Pancreas ductal cells | 2,437 | 0.74172822371765% | — | — | — |
| Basal cells | 2,107 | 0.6412890305183% | — | — | — |
| Cycling basal cells | 955 | 0.2906649378951% | — | — | — |
| Cholangiocytes | 727 | 0.22127058623009% | — | — | — |
| Parietal cells | 611 | 0.18596468801456% | — | — | — |
| Cycling glandular cells | 457 | 0.13909306452153% | — | — | — |
| Cycling gastric epithelial cell | 317 | 0.096482497709682% | — | — | — |
| Other stromal cells | 7,899 | 2.4041490517627% | — | — | — |
| Stellate cells | 1,936 | 0.58924326676954% | — | — | — |
| Fibroblasts | 743 | 0.2261403652943% | — | — | — |
| Adipocytes | 225 | 0.068481268090468% | — | — | — |
| Pericytes | 161 | 0.049002151833624% | — | — | — |
| Type II myonuclei | 12,032 | 3.6620738562867% | — | — | — |
| Smooth muscle cells | 2,662 | 0.81020949180812% | — | — | — |
| Type I myonuclei | 1,229 | 0.37405990436971% | — | — | — |
| Satellite cells | 546 | 0.1661812105662% | — | — | — |
| Myotendinous junctions | 149 | 0.045349817535466% | — | — | — |
| Neuromuscular junctions | 114 | 0.034697175832504% | — | — | — |
| Endothelial cells | 10,533 | 3.2058364302085% | — | — | — |
| Intercalated cells | 3,276 | 0.99708726339722% | — | — | — |
49 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Acinar cells | 91947 | 27.9851 | Epithelial cells | #4CAF50 |
| celltype | Hepatocytes | 72703 | 22.128 | Epithelial cells | #AB47BC |
| celltype | T cells | 20908 | 6.3636 | Immune cells | #D4E157 |
| celltype | Glandular cells | 14092 | 4.2891 | Epithelial cells | #008080 |
| celltype | Mucous cells | 12712 | 3.869 | Epithelial cells | #EF5350 |
| celltype | Type II myonuclei | 12032 | 3.6621 | Muscle cells | #BC8F8F |
| celltype | Endothelial cells | 10533 | 3.2058 | Endothelial cells | #BA68C8 |
| celltype | Enterocytes | 9351 | 2.8461 | Epithelial cells | #26C6DA |
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