ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys06
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys06/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
312,506
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
36
Annotated cell-type groups
🫀
Tissues
9
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 4,293 | 1.3737336243144% | — | — | — |
| Dendritic cells | 2,602 | 0.83262401361894% | — | — | — |
| Monocytes | 1,760 | 0.56318918676761% | — | — | — |
| Macrophages | 352 | 0.11263783735352% | — | — | — |
| Natural killer cells | 88 | 0.028159459338381% | — | — | — |
| Luminal epithelial cells | 76,631 | 24.521449188176% | — | — | — |
| Stereociliated cells | 54,488 | 17.435825232156% | — | — | — |
| Oviduct epithelial cells | 20,036 | 6.4113969011795% | — | — | — |
| Basal cells | 8,079 | 2.585230363577% | — | — | — |
| Ciliated cells | 4,221 | 1.3506940666739% | — | — | — |
| Peritubular myoid cells | 3,620 | 1.158377759147% | — | — | — |
| Epididymal epithelial cells | 3,079 | 0.98526108298721% | — | — | — |
| Pseudostratified columnar cells | 2,309 | 0.73886581377638% | — | — | — |
| Glandular cells | 2,131 | 0.68190690738738% | — | — | — |
| Progenitor-like epithelial cells | 1,640 | 0.52478992403346% | — | — | — |
| Surface epithelial cells | 711 | 0.22751563169987% | — | — | — |
| Sertoli cells | 572 | 0.18303648569947% | — | — | — |
| Prostate progenitor cells | 339 | 0.10847791722399% | — | — | — |
| Cycling luminal epithelial cells | 269 | 0.086078347295732% | — | — | — |
| Cycling epithelial cells | 210 | 0.067198709784772% | — | — | — |
| Cycling stereociliated cells | 19 | 0.0060798832662413% | — | — | — |
| Other stromal cells | 30,265 | 9.6846140554101% | — | — | — |
| Granulosa cells | 15,275 | 4.8879061522019% | — | — | — |
| Pericytes | 5,377 | 1.7206069643463% | — | — | — |
| Theca cells | 2,453 | 0.78494492905736% | — | — | — |
| Leydig cells | 2,133 | 0.68254689509961% | — | — | — |
| Mesothelial cells | 1,713 | 0.54814947553007% | — | — | — |
| Fibroblasts | 536 | 0.17151670687923% | — | — | — |
| Adipocytes | 105 | 0.033599354892386% | — | — | — |
| Smooth muscle cells | 36,462 | 11.667615981773% | — | — | — |
| Type II myonuclei | 134 | 0.042879176719807% | — | — | — |
| Spermatocytes | 15,867 | 5.0773425150237% | — | — | — |
| Spermatids | 4,497 | 1.4390123709625% | — | — | — |
| Spermatogonia | 133 | 0.042559182863689% | — | — | — |
| Endothelial cells | 8,699 | 2.7836265543702% | — | — | — |
| Intercalated cells | 1,408 | 0.45055134941409% | — | — | — |
36 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Luminal epithelial cells | 76631 | 24.5214 | Epithelial cells | #4682B4 |
| celltype | Stereociliated cells | 54488 | 17.4358 | Epithelial cells | #FFC0CB |
| celltype | Smooth muscle cells | 36462 | 11.6676 | Muscle cells | #5C6BC0 |
| celltype | Other stromal cells | 30265 | 9.6846 | Stromal cells | #008B8B |
| celltype | Oviduct epithelial cells | 20036 | 6.4114 | Epithelial cells | #0000CD |
| celltype | Spermatocytes | 15867 | 5.0773 | Germ cells | #EC407A |
| celltype | Granulosa cells | 15275 | 4.8879 | Stromal cells | #00FF00 |
| celltype | Endothelial cells | 8699 | 2.7836 | Endothelial cells | #BA68C8 |
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