ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
181,577
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
27
Annotated cell-type groups
🫀
Tissues
6
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 2,344 | 1.2909123952924% | — | — | — |
| Microglia | 98 | 0.053971593318537% | — | — | — |
| B cells | 6,422 | 3.5367915539964% | — | — | — |
| Natural killer T cells | 6,030 | 3.3209051807222% | — | — | — |
| Macrophages | 3,774 | 2.0784570733077% | — | — | — |
| T cells | 1,129 | 0.62177478425131% | — | — | — |
| Monocytes | 752 | 0.41414936913816% | — | — | — |
| Dendritic cells | 591 | 0.32548175154342% | — | — | — |
| Mast cells | 109 | 0.060029629303271% | — | — | — |
| Glomerulosa cells | 16,471 | 9.0710827913227% | — | — | — |
| Lactotropes | 13,263 | 7.3043392059567% | — | — | — |
| Fasciculata cells | 12,799 | 7.0488002335098% | — | — | — |
| Somatotropes | 11,981 | 6.5983026484632% | — | — | — |
| Follicular cells | 8,020 | 4.416858963415% | — | — | — |
| Corticotropes | 4,927 | 2.7134493906167% | — | — | — |
| Gonadotropes | 3,758 | 2.0696453846027% | — | — | — |
| Thyrotropes | 989 | 0.54467250808197% | — | — | — |
| Melanotropes | 959 | 0.52815059175997% | — | — | — |
| Adipocytes | 22,962 | 12.64587475286% | — | — | — |
| Adipocyte progenitor cells | 22,434 | 12.355089025592% | — | — | — |
| Mesothelial cells | 20,596 | 11.342846285598% | — | — | — |
| Folliculostellate cells | 3,805 | 2.0955297201738% | — | — | — |
| Other stromal cells | 2,291 | 1.2617236764568% | — | — | — |
| Fibroblasts | 1,763 | 0.9709379491896% | — | — | — |
| Smooth muscle cells | 776 | 0.42736690219576% | — | — | — |
| Skeletal myonuclei | 72 | 0.039652599172803% | — | — | — |
| Endothelial cells | 12,462 | 6.8632040401593% | — | — | — |
27 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Adipocytes | 22962 | 12.6459 | Stromal cells | #42A5F5 |
| celltype | Adipocyte progenitor cells | 22434 | 12.3551 | Stromal cells | #E91E63 |
| celltype | Mesothelial cells | 20596 | 11.3428 | Stromal cells | #8D6E63 |
| celltype | Glomerulosa cells | 16471 | 9.0711 | Epithelial cells | #2F4F4F |
| celltype | Lactotropes | 13263 | 7.3043 | Epithelial cells | #66CDAA |
| celltype | Fasciculata cells | 12799 | 7.0488 | Epithelial cells | #4B0082 |
| celltype | Endothelial cells | 12462 | 6.8632 | Endothelial cells | #BA68C8 |
| celltype | Somatotropes | 11981 | 6.5983 | Epithelial cells | #C71585 |
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