ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
95,560
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
20
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 1,221 | 1.2777312683131% | — | — | — |
| Macrophages | 1,203 | 1.2588949351193% | — | — | — |
| Natural killer T cells | 489 | 0.51172038509837% | — | — | — |
| Monocytes | 254 | 0.26580159062369% | — | — | — |
| Urothelial cells | 21,701 | 22.709292591042% | — | — | — |
| Proximal tubule cells | 18,989 | 19.871285056509% | — | — | — |
| Distal convoluted tubule cells | 4,436 | 4.6421096693177% | — | — | — |
| Descending limb of loop of Henle cells | 3,343 | 3.4983256592717% | — | — | — |
| Connecting tubule cells | 2,238 | 2.3419840937631% | — | — | — |
| Principal like cells | 1,442 | 1.5089995814148% | — | — | — |
| Podocytes | 1,419 | 1.484930933445% | — | — | — |
| Cycling intermediate cells | 162 | 0.16952699874424% | — | — | — |
| Other stromal cells | 2,159 | 2.2593135203014% | — | — | — |
| Mesothelial cells | 857 | 0.89681875261616% | — | — | — |
| Fibroblasts | 605 | 0.63311008790289% | — | — | — |
| Smooth muscle cells | 508 | 0.53160318124738% | — | — | — |
| Endothelial cells | 2,976 | 3.1142737547091% | — | — | — |
| Ascending loop of Henle cells | 14,187 | 14.846169945584% | — | — | — |
| Principal cells | 11,499 | 12.033277521976% | — | — | — |
| Intercalated cells | 5,872 | 6.1448304730013% | — | — | — |
20 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Urothelial cells | 21701 | 22.7093 | Epithelial cells | #7E57C2 |
| celltype | Proximal tubule cells | 18989 | 19.8713 | Epithelial cells | #26A69A |
| celltype | Ascending loop of Henle cells | 14187 | 14.8462 | Other | #26A69A |
| celltype | Principal cells | 11499 | 12.0333 | Other | #AB47BC |
| celltype | Intercalated cells | 5872 | 6.1448 | Other | #66BB6A |
| celltype | Distal convoluted tubule cells | 4436 | 4.6421 | Epithelial cells | #9CCC65 |
| celltype | Descending limb of loop of Henle cells | 3343 | 3.4983 | Epithelial cells | #778899 |
| celltype | Endothelial cells | 2976 | 3.1143 | Endothelial cells | #BA68C8 |
First 8 rows