ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys01tis18
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_tis/sys01tis18/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
10,064
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
8
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Ganglion cells | 2,955 | 29.362082670906% | — | — | — |
| Rod cells | 1,747 | 17.358903020668% | — | — | — |
| Amacrine cells | 1,591 | 15.808823529412% | — | — | — |
| Bipolar cells | 1,469 | 14.596581875994% | — | — | — |
| Muller cells | 1,068 | 10.612082670906% | — | — | — |
| Cone cells | 980 | 9.7376788553259% | — | — | — |
| Horizontal cells | 222 | 2.2058823529412% | — | — | — |
| Microglia | 32 | 0.31796502384738% | — | — | — |
8 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Ganglion cells | 2955 | 29.3621 | Neural cells | #A020F0 |
| celltype | Rod cells | 1747 | 17.3589 | Neural cells | #FF00FF |
| celltype | Amacrine cells | 1591 | 15.8088 | Neural cells | #4b0082 |
| celltype | Bipolar cells | 1469 | 14.5966 | Neural cells | #663399 |
| celltype | Muller cells | 1068 | 10.6121 | Neural cells | #483D8B |
| celltype | Cone cells | 980 | 9.7377 | Neural cells | #7A378B |
| celltype | Horizontal cells | 222 | 2.2059 | Neural cells | #8A2BE2 |
| celltype | Microglia | 32 | 0.318 | Neural cells | #D4E157 |
First 8 rows