ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys04tis02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_tis/sys04tis02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
5,669
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
10
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Goblet cells | 593 | 10.460398659376% | — | — | — |
| Macrophages | 363 | 6.4032457223496% | — | — | — |
| Serous cells | 1,596 | 28.153113423884% | — | — | — |
| Ciliated cells | 1,530 | 26.988886928912% | — | — | — |
| Basal cells | 535 | 9.4372905274299% | — | — | — |
| Other stromal cells | 338 | 5.9622508378903% | — | — | — |
| Adipocytes | 269 | 4.7451049567825% | — | — | — |
| Mesothelial cells | 199 | 3.5103192802963% | — | — | — |
| Smooth muscle cells | 177 | 3.1222437819721% | — | — | — |
| Endothelial cells | 69 | 1.2171458811078% | — | — | — |
10 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Serous cells | 1596 | 28.1531 | Epithelial cells | #FF1493 |
| celltype | Ciliated cells | 1530 | 26.9889 | Epithelial cells | #FFCA28 |
| celltype | Goblet cells | 593 | 10.4604 | Immune cells | #FFA726 |
| celltype | Basal cells | 535 | 9.4373 | Epithelial cells | #78909C |
| celltype | Macrophages | 363 | 6.4032 | Immune cells | #5C6BC0 |
| celltype | Other stromal cells | 338 | 5.9623 | Stromal cells | #008B8B |
| celltype | Adipocytes | 269 | 4.7451 | Stromal cells | #42A5F5 |
| celltype | Mesothelial cells | 199 | 3.5103 | Stromal cells | #8D6E63 |
First 8 rows