ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis03
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_tis/sys05tis03/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
13,891
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 728 | 5.2408033978835% | — | — | — |
| Astrocytes | 308 | 2.2172629760276% | — | — | — |
| Chromaffin cells | 120 | 0.86386869195882% | — | — | — |
| Enteric neurons | 120 | 0.86386869195882% | — | — | — |
| T cells | 3,620 | 26.060038874091% | — | — | — |
| B cells | 2,916 | 20.992009214599% | — | — | — |
| Plasma B cells | 869 | 6.2558491109351% | — | — | — |
| Macrophages | 622 | 4.4777193866532% | — | — | — |
| Natural killer cells | 460 | 3.3114966525088% | — | — | — |
| Monocytes | 100 | 0.71989057663235% | — | — | — |
| Mast cells | 26 | 0.18717154992441% | — | — | — |
| Mucous cells | 856 | 6.1622633359729% | — | — | — |
| Parietal cells | 611 | 4.3985314232237% | — | — | — |
| Cycling gastric epithelial cell | 317 | 2.2820531279246% | — | — | — |
| Other stromal cells | 445 | 3.203513066014% | — | — | — |
| Pericytes | 115 | 0.8278741631272% | — | — | — |
| Smooth muscle cells | 240 | 1.7277373839176% | — | — | — |
| Endothelial cells | 1,418 | 10.208048376647% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 3620 | 26.06 | Immune cells | #D4E157 |
| celltype | B cells | 2916 | 20.992 | Immune cells | #2E7D32 |
| celltype | Endothelial cells | 1418 | 10.208 | Endothelial cells | #BA68C8 |
| celltype | Plasma B cells | 869 | 6.2558 | Immune cells | #42A5F5 |
| celltype | Mucous cells | 856 | 6.1623 | Epithelial cells | #EF5350 |
| celltype | Enteric glial cells | 728 | 5.2408 | Neural cells | #FFEE58 |
| celltype | Macrophages | 622 | 4.4777 | Immune cells | #5C6BC0 |
| celltype | Parietal cells | 611 | 4.3985 | Epithelial cells | #F44336 |
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