ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075_tis/sys05tis07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
29,827
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
16
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 194 | 0.65041740704731% | — | — | — |
| T cells | 6,147 | 20.608844335669% | — | — | — |
| Plasma B cells | 4,787 | 16.049217152245% | — | — | — |
| B cells | 3,905 | 13.092164817112% | — | — | — |
| Cycling B cells | 1,832 | 6.1420860294364% | — | — | — |
| Goblet cells | 1,168 | 3.9159151104704% | — | — | — |
| Monocytes | 499 | 1.6729808562712% | — | — | — |
| Cycling T cells | 265 | 0.88845676735843% | — | — | — |
| Dendritic cells | 137 | 0.45931538538908% | — | — | — |
| Mast cells | 106 | 0.35538270694337% | — | — | — |
| Enterocytes | 9,023 | 30.251114761793% | — | — | — |
| Fibroblasts | 743 | 2.4910316156502% | — | — | — |
| Other stromal cells | 407 | 1.3645354879807% | — | — | — |
| Pericytes | 46 | 0.15422268414524% | — | — | — |
| Smooth muscle cells | 126 | 0.42243604787609% | — | — | — |
| Endothelial cells | 442 | 1.4818788346129% | — | — | — |
16 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 9023 | 30.2511 | Epithelial cells | #26C6DA |
| celltype | T cells | 6147 | 20.6088 | Immune cells | #D4E157 |
| celltype | Plasma B cells | 4787 | 16.0492 | Immune cells | #42A5F5 |
| celltype | B cells | 3905 | 13.0922 | Immune cells | #2E7D32 |
| celltype | Cycling B cells | 1832 | 6.1421 | Immune cells | #7E57C2 |
| celltype | Goblet cells | 1168 | 3.9159 | Immune cells | #FFA726 |
| celltype | Fibroblasts | 743 | 2.491 | Stromal cells | #42A5F5 |
| celltype | Monocytes | 499 | 1.673 | Immune cells | #7E57C2 |
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