ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP084
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP084/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
98,853
Cells represented in this release
🧬
Total Genes
12,616
Genes represented in the source matrix
🔷
Cell Types
38
Annotated cell-type groups
🫀
Tissues
12
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 3,469 | 3.5092511102344% | — | — | — |
| Astrocytes | 1,788 | 1.8087463202938% | — | — | — |
| Microglia | 1,100 | 1.1127633961539% | — | — | — |
| Inhibitory neurons | 579 | 0.58571818761191% | — | — | — |
| Rod cells | 389 | 0.39351360100351% | — | — | — |
| Cone cells | 330 | 0.33382901884617% | — | — | — |
| Excitatory neurons | 322 | 0.32573619414686% | — | — | — |
| Bipolar cells | 106 | 0.10722992726574% | — | — | — |
| Melanocytes | 104 | 0.10520672109091% | — | — | — |
| Muller cells | 42 | 0.04248732967133% | — | — | — |
| Schwann cells | 8 | 0.008092824699301% | — | — | — |
| Monocytes | 10,002 | 10.118054080301% | — | — | — |
| Macrophages | 9,538 | 9.6486702477416% | — | — | — |
| Mast cells | 3,781 | 3.8248712735071% | — | — | — |
| Erythroid cells | 732 | 0.74049345998604% | — | — | — |
| Pancreas islet cells | 648 | 0.65551880064338% | — | — | — |
| Kupffer cells | 195 | 0.19726260204546% | — | — | — |
| Dendritic cells | 88 | 0.089021071692311% | — | — | — |
| B cells | 35 | 0.035406108059442% | — | — | — |
| T cells | 30 | 0.030348092622379% | — | — | — |
| Natural killer cells | 24 | 0.024278474097903% | — | — | — |
| Hepatocytes | 12,192 | 12.333464841735% | — | — | — |
| Acinar cells | 10,561 | 10.683540206165% | — | — | — |
| Keratinocytes | 6,388 | 6.4621205223918% | — | — | — |
| Enterocytes | 6,364 | 6.4378420482939% | — | — | — |
| Proximal tubule cells | 1,271 | 1.2857475241014% | — | — | — |
| Retinal pigmentary epithelial cells | 577 | 0.58369498143708% | — | — | — |
| Fibroblasts | 8,481 | 8.5794057843465% | — | — | — |
| Granulosa cells | 1,945 | 1.9675680050176% | — | — | — |
| Other stromal cells | 1,332 | 1.3474553124336% | — | — | — |
| Adipocytes | 461 | 0.46634902329722% | — | — | — |
| Mesothelial cells | 44 | 0.044510535846155% | — | — | — |
| Cardiomyocytes | 751 | 0.75971391864688% | — | — | — |
| Spermatogonia | 9,125 | 9.2308781726402% | — | — | — |
| Spermatids | 3,645 | 3.687293253619% | — | — | — |
| Spermatocytes | 1,791 | 1.811781129556% | — | — | — |
| Endothelial cells | 357 | 0.36114230220631% | — | — | — |
| Principal cells | 258 | 0.26099359655246% | — | — | — |
38 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Hepatocytes | 12192 | 12.3335 | Epithelial cells | #FFCA28 |
| celltype | Acinar cells | 10561 | 10.6835 | Epithelial cells | #4CAF50 |
| celltype | Monocytes | 10002 | 10.1181 | Immune cells | #9CCC65 |
| celltype | Macrophages | 9538 | 9.6487 | Immune cells | #D4E157 |
| celltype | Spermatogonia | 9125 | 9.2309 | Germ cells | #FFA726 |
| celltype | Fibroblasts | 8481 | 8.5794 | Stromal cells | #5C6BC0 |
| celltype | Keratinocytes | 6388 | 6.4621 | Epithelial cells | #29B6F6 |
| celltype | Enterocytes | 6364 | 6.4378 | Epithelial cells | #2E7D32 |
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