ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys01
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP084_sys/sys01/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
10,332
Cells represented in this release
🧬
Total Genes
12,616
Genes represented in the source matrix
🔷
Cell Types
15
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 3,469 | 33.575300038715% | — | — | — |
| Astrocytes | 1,788 | 17.305458768873% | — | — | — |
| Microglia | 1,100 | 10.646535036779% | — | — | — |
| Inhibitory neurons | 579 | 5.6039488966318% | — | — | — |
| Rod cells | 389 | 3.7650019357336% | — | — | — |
| Cone cells | 330 | 3.1939605110337% | — | — | — |
| Excitatory neurons | 322 | 3.1165311653117% | — | — | — |
| Bipolar cells | 106 | 1.0259388308169% | — | — | — |
| Melanocytes | 104 | 1.0065814943864% | — | — | — |
| Muller cells | 42 | 0.40650406504065% | — | — | — |
| Monocytes | 363 | 3.513356562137% | — | — | — |
| Macrophages | 221 | 2.138985675571% | — | — | — |
| Retinal pigmentary epithelial cells | 577 | 5.5845915602013% | — | — | — |
| Fibroblasts | 769 | 7.44289585753% | — | — | — |
| Endothelial cells | 173 | 1.6744096012389% | — | — | — |
15 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Oligodendrocytes | 3469 | 33.5753 | Neural cells | #BA68C8 |
| celltype | Astrocytes | 1788 | 17.3055 | Neural cells | #42A5F5 |
| celltype | Microglia | 1100 | 10.6465 | Neural cells | #FF8A65 |
| celltype | Fibroblasts | 769 | 7.4429 | Stromal cells | #5C6BC0 |
| celltype | Inhibitory neurons | 579 | 5.6039 | Neural cells | #EC407A |
| celltype | Retinal pigmentary epithelial cells | 577 | 5.5846 | Epithelial cells | #FF00FF |
| celltype | Rod cells | 389 | 3.765 | Neural cells | #FF00FF |
| celltype | Monocytes | 363 | 3.5134 | Immune cells | #9CCC65 |
First 8 rows