ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP089
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP089/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
105,505
Cells represented in this release
🧬
Total Genes
17,660
Genes represented in the source matrix
🔷
Cell Types
36
Annotated cell-type groups
🫀
Tissues
8
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 48,360 | 45.836690204256% | — | — | — |
| Inhibitory neurons | 17,411 | 16.502535424861% | — | — | — |
| Oligodendrocytes | 6,158 | 5.8366902042557% | — | — | — |
| Astrocytes | 3,008 | 2.8510497132837% | — | — | — |
| Oligodendrocyte progenitor cells | 1,111 | 1.0530306620539% | — | — | — |
| Microglia | 359 | 0.340268233733% | — | — | — |
| Enteric neurons | 24 | 0.022747737074072% | — | — | — |
| Macrophages | 1,569 | 1.4871333112175% | — | — | — |
| T cells | 578 | 0.54784133453391% | — | — | — |
| Kupffer cells | 373 | 0.35353774702621% | — | — | — |
| B cells | 177 | 0.16776456092128% | — | — | — |
| Monocytes | 73 | 0.069191033600303% | — | — | — |
| Plasma B cells | 49 | 0.046443296526231% | — | — | — |
| Mast cells | 26 | 0.024643381830245% | — | — | — |
| Hepatocytes | 5,269 | 4.994076110137% | — | — | — |
| Alveolar type 2 cells | 1,748 | 1.6567935168949% | — | — | — |
| Proximal tubule cells | 1,659 | 1.5724373252452% | — | — | — |
| Alveolar type 1 cells | 1,261 | 1.1952040187669% | — | — | — |
| Ciliated cells | 836 | 0.79237950808019% | — | — | — |
| Enterocytes | 459 | 0.43505047154163% | — | — | — |
| Squamous cells | 458 | 0.43410264916355% | — | — | — |
| Keratinocytes | 380 | 0.36017250367281% | — | — | — |
| Basal cells | 249 | 0.2360077721435% | — | — | — |
| Descending limb of loop of Henle cells | 108 | 0.10236481683333% | — | — | — |
| Distal convoluted tubule cells | 43 | 0.040756362257713% | — | — | — |
| Podocytes | 34 | 0.032225960854936% | — | — | — |
| Cholangiocytes | 33 | 0.031278138476849% | — | — | — |
| Mesothelial cells | 2,164 | 2.0510876261789% | — | — | — |
| Fibroblasts | 1,890 | 1.7913842945832% | — | — | — |
| Stellate cells | 239 | 0.22652954836264% | — | — | — |
| Cardiomyocytes | 2,953 | 2.798919482489% | — | — | — |
| Smooth muscle cells | 983 | 0.93170939765888% | — | — | — |
| Endothelial cells | 4,851 | 4.5978863560969% | — | — | — |
| Ascending loop of Henle cells | 505 | 0.47865030093361% | — | — | — |
| Principal cells | 89 | 0.084356191649685% | — | — | — |
| Intercalated cells | 18 | 0.017060802805554% | — | — | — |
36 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Excitatory neurons | 48360 | 45.8367 | Neural cells | #FFCA28 |
| celltype | Inhibitory neurons | 17411 | 16.5025 | Neural cells | #8D6E63 |
| celltype | Oligodendrocytes | 6158 | 5.8367 | Neural cells | #F44336 |
| celltype | Hepatocytes | 5269 | 4.9941 | Epithelial cells | #29B6F6 |
| celltype | Endothelial cells | 4851 | 4.5979 | Endothelial cells | #FF7043 |
| celltype | Astrocytes | 3008 | 2.851 | Neural cells | #FFA726 |
| celltype | Cardiomyocytes | 2953 | 2.7989 | Muscle cells | #66BB6A |
| celltype | Mesothelial cells | 2164 | 2.0511 | Stromal cells | #9CCC65 |
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