ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP089_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
9,812
Cells represented in this release
🧬
Total Genes
17,660
Genes represented in the source matrix
🔷
Cell Types
15
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric neurons | 24 | 0.24459845087648% | — | — | — |
| Kupffer cells | 373 | 3.8014675907053% | — | — | — |
| T cells | 358 | 3.6485935589075% | — | — | — |
| B cells | 177 | 1.803913575214% | — | — | — |
| Monocytes | 73 | 0.74398695474929% | — | — | — |
| Plasma B cells | 49 | 0.49938850387281% | — | — | — |
| Hepatocytes | 5,269 | 53.699551569507% | — | — | — |
| Enterocytes | 459 | 4.6779453730126% | — | — | — |
| Squamous cells | 458 | 4.6677537708928% | — | — | — |
| Basal cells | 249 | 2.5377089278435% | — | — | — |
| Cholangiocytes | 33 | 0.33632286995516% | — | — | — |
| Stellate cells | 239 | 2.4357929066449% | — | — | — |
| Fibroblasts | 71 | 0.72360375050958% | — | — | — |
| Smooth muscle cells | 895 | 9.1214838972687% | — | — | — |
| Endothelial cells | 1,085 | 11.057888300041% | — | — | — |
15 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Hepatocytes | 5269 | 53.6996 | Epithelial cells | #29B6F6 |
| celltype | Endothelial cells | 1085 | 11.0579 | Endothelial cells | #FF7043 |
| celltype | Smooth muscle cells | 895 | 9.1215 | Muscle cells | #AB47BC |
| celltype | Enterocytes | 459 | 4.6779 | Epithelial cells | #5C6BC0 |
| celltype | Squamous cells | 458 | 4.6678 | Epithelial cells | #DB7093 |
| celltype | Kupffer cells | 373 | 3.8015 | Immune cells | #EF5350 |
| celltype | T cells | 358 | 3.6486 | Immune cells | #66BB6A |
| celltype | Basal cells | 249 | 2.5377 | Epithelial cells | #26A69A |
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