ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP091
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP091/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
58,895
Cells represented in this release
🧬
Total Genes
8,659
Genes represented in the source matrix
🔷
Cell Types
24
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 1,767 | 3.000254690551% | — | — | — |
| Inhibitory neurons | 1,485 | 2.5214364547075% | — | — | — |
| Oligodendrocytes | 1,339 | 2.2735376517531% | — | — | — |
| Astrocytes | 1,147 | 1.947533746498% | — | — | — |
| Oligodendrocyte progenitor cells | 378 | 0.64182018847101% | — | — | — |
| Microglia | 205 | 0.3480770863401% | — | — | — |
| Macrophages | 2,438 | 4.1395704219373% | — | — | — |
| Kupffer cells | 1,007 | 1.7098225655828% | — | — | — |
| B cells | 803 | 1.3634434162493% | — | — | — |
| T cells | 520 | 0.88292724339927% | — | — | — |
| Hepatocytes | 17,709 | 30.068766448765% | — | — | — |
| Alveolar type 1 cells | 5,955 | 10.111214873928% | — | — | — |
| Alveolar type 2 cells | 3,855 | 6.5455471602004% | — | — | — |
| Cholangiocytes | 1,026 | 1.742083368707% | — | — | — |
| Proximal tubule cells | 682 | 1.1579930384583% | — | — | — |
| Podocytes | 256 | 0.43467187367349% | — | — | — |
| Ciliated cells | 221 | 0.37524407844469% | — | — | — |
| Distal convoluted tubule cells | 121 | 0.20545037779098% | — | — | — |
| Fibroblasts | 722 | 1.2259105187198% | — | — | — |
| Mesothelial cells | 468 | 0.79463451905934% | — | — | — |
| Endothelial cells | 16,050 | 27.25188895492% | — | — | — |
| Principal cells | 382 | 0.64861193649716% | — | — | — |
| Ascending loop of Henle cells | 241 | 0.40920281857543% | — | — | — |
| Intercalated cells | 118 | 0.20035656677137% | — | — | — |
24 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Hepatocytes | 17709 | 30.0688 | Epithelial cells | #5C6BC0 |
| celltype | Endothelial cells | 16050 | 27.2519 | Endothelial cells | #2E7D32 |
| celltype | Alveolar type 1 cells | 5955 | 10.1112 | Epithelial cells | #4CAF50 |
| celltype | Alveolar type 2 cells | 3855 | 6.5455 | Epithelial cells | #E91E63 |
| celltype | Macrophages | 2438 | 4.1396 | Immune cells | #8D6E63 |
| celltype | Excitatory neurons | 1767 | 3.0003 | Neural cells | #78909C |
| celltype | Inhibitory neurons | 1485 | 2.5214 | Neural cells | #FFCA28 |
| celltype | Oligodendrocytes | 1339 | 2.2735 | Neural cells | #00ACC1 |
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