ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP101
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP101/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
604,961
Cells represented in this release
🧬
Total Genes
16,479
Genes represented in the source matrix
🔷
Cell Types
100
Annotated cell-type groups
🫀
Tissues
42
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 55,441 | 9.1643924153788% | — | — | — |
| Excitatory neurons | 53,793 | 8.8919781605756% | — | — | — |
| Inhibitory neurons | 37,307 | 6.1668438130722% | — | — | — |
| Astrocytes | 11,409 | 1.8859066948117% | — | — | — |
| Microglia | 10,976 | 1.8143318329611% | — | — | — |
| Granule cells | 7,151 | 1.1820596699622% | — | — | — |
| Chromaffin cells | 5,372 | 0.88799112670073% | — | — | — |
| Oligodendrocyte progenitor cells | 5,008 | 0.8278219587709% | — | — | — |
| Amacrine cells | 2,520 | 0.41655577797577% | — | — | — |
| Cone cells | 2,321 | 0.38366109550864% | — | — | — |
| Muller cells | 1,717 | 0.28381994872397% | — | — | — |
| Bipolar cells | 1,602 | 0.26481045885603% | — | — | — |
| Ganglion cells | 1,014 | 0.16761411066168% | — | — | — |
| Rod cells | 653 | 0.10794084246753% | — | — | — |
| Purkinje cells | 544 | 0.08992315207096% | — | — | — |
| Melanocytes | 539 | 0.089096652511484% | — | — | — |
| Enteric glial cells | 134 | 0.02215018819395% | — | — | — |
| Glial cells | 109 | 0.018017690396571% | — | — | — |
| Schwann cells | 52 | 0.0085955954185476% | — | — | — |
| Enteric neurons | 20 | 0.0033059982379029% | — | — | — |
| T cells | 68,740 | 11.362715943672% | — | — | — |
| Monocytes | 26,230 | 4.3358166890097% | — | — | — |
| B cells | 22,355 | 3.695279530416% | — | — | — |
| Macrophages | 19,007 | 3.1418554253911% | — | — | — |
| Neutrophils | 17,411 | 2.8780367660064% | — | — | — |
| Dendritic cells | 6,672 | 1.1028810121644% | — | — | — |
| Natural killer T cells | 4,549 | 0.75194929921102% | — | — | — |
| Club cells | 2,766 | 0.45721955630198% | — | — | — |
| Kupffer cells | 2,392 | 0.39539738925319% | — | — | — |
| Plasma B cells | 2,324 | 0.38415699524432% | — | — | — |
| Pancreas islet cells | 2,243 | 0.37076770238081% | — | — | — |
| Erythroid cells | 2,199 | 0.36349450625743% | — | — | — |
| Natural killer cells | 1,559 | 0.25770256264453% | — | — | — |
| Cycling B cells | 580 | 0.095873948899185% | — | — | — |
| Goblet cells | 491 | 0.081162256740517% | — | — | — |
| Mast cells | 353 | 0.058350868898987% | — | — | — |
| Hematopoietic stem and progenitor cells | 297 | 0.049094073832859% | — | — | — |
| Common myeloid progenitors | 237 | 0.03917607911915% | — | — | — |
| Cycling T cells | 104 | 0.017191190837095% | — | — | — |
| Basophils | 73 | 0.012066893568346% | — | — | — |
| Pancreas ductal cells | 15,377 | 2.5418167452117% | — | — | — |
| Keratinocytes | 8,768 | 1.4493496274966% | — | — | — |
| Acinar cells | 6,666 | 1.101889212693% | — | — | — |
| Fasciculata cells | 6,084 | 1.0056846639701% | — | — | — |
| Urothelial cells | 5,507 | 0.91030661480657% | — | — | — |
| Follicular cells | 5,344 | 0.88336272916767% | — | — | — |
| Corticotropes | 5,066 | 0.83740935366081% | — | — | — |
| Mucous cells | 4,746 | 0.78451338185437% | — | — | — |
| Peritubular myoid cells | 4,082 | 0.67475424035599% | — | — | — |
| Enterocytes | 3,992 | 0.65987724828543% | — | — | — |
| Basal cells | 3,937 | 0.65078575313119% | — | — | — |
| Alveolar type 2 cells | 3,714 | 0.61392387277858% | — | — | — |
| Proximal tubule cells | 3,432 | 0.56730929762414% | — | — | — |
| Somatotropes | 3,263 | 0.53937361251386% | — | — | — |
| Lactotropes | 3,215 | 0.5314392167429% | — | — | — |
| Alveolar type 1 cells | 2,771 | 0.45804605586145% | — | — | — |
| Hepatocytes | 2,710 | 0.44796276123585% | — | — | — |
| Glandular cells | 2,154 | 0.35605601022215% | — | — | — |
| Serous cells | 1,174 | 0.1940620965649% | — | — | — |
| Taste cells | 775 | 0.12810743171874% | — | — | — |
| Ciliated cells | 729 | 0.12050363577156% | — | — | — |
| Progenitor-like epithelial cells | 627 | 0.10364304475826% | — | — | — |
| Distal convoluted tubule cells | 527 | 0.087113053568742% | — | — | — |
| Retinal pigmentary epithelial cells | 523 | 0.086451853921162% | — | — | — |
| Cycling basal cells | 450 | 0.074384960352816% | — | — | — |
| Cycling gastric epithelial cell | 370 | 0.061160967401204% | — | — | — |
| Cycling epithelial cells | 318 | 0.052565371982657% | — | — | — |
| Connecting tubule cells | 304 | 0.050251173216125% | — | — | — |
| Gonadotropes | 284 | 0.046945174978222% | — | — | — |
| Podocytes | 153 | 0.025290886519957% | — | — | — |
| Choroid plexus | 125 | 0.020662488986893% | — | — | — |
| Ependymal cells | 94 | 0.015538191718144% | — | — | — |
| Parietal cells | 35 | 0.0057854969163301% | — | — | — |
| Squamous cells | 34 | 0.005620197004435% | — | — | — |
| Cholangiocytes | 28 | 0.0046283975330641% | — | — | — |
| Neuroendocrine cells | 14 | 0.0023141987665321% | — | — | — |
| Fibroblasts | 15,954 | 2.6371947943752% | — | — | — |
| Other stromal cells | 14,415 | 2.3827982299685% | — | — | — |
| Adipocytes | 10,185 | 1.6835796026521% | — | — | — |
| Homeostatic chondrocytes | 8,571 | 1.4167855448533% | — | — | — |
| Leydig cells | 2,746 | 0.45391355806407% | — | — | — |
| Theca cells | 2,466 | 0.40762958273343% | — | — | — |
| Stellate cells | 1,734 | 0.28663004722618% | — | — | — |
| Mesenchymal cells | 1,325 | 0.21902238326107% | — | — | — |
| Epineurial cells | 973 | 0.16083681427398% | — | — | — |
| Pericytes | 905 | 0.14959642026511% | — | — | — |
| Folliculostellate cells | 667 | 0.11025504123406% | — | — | — |
| Mesothelial cells | 584 | 0.096535148546766% | — | — | — |
| Type II myonuclei | 23,324 | 3.8554551450424% | — | — | — |
| Smooth muscle cells | 13,600 | 2.248078801774% | — | — | — |
| Cardiomyocytes | 3,460 | 0.57193769515721% | — | — | — |
| Type I myonuclei | 3,176 | 0.52499252017899% | — | — | — |
| Satellite cells | 437 | 0.072236061498179% | — | — | — |
| Neuromuscular junctions | 46 | 0.0076037959471768% | — | — | — |
| Spermatocytes | 3,341 | 0.55226700564169% | — | — | — |
| Spermatogonia | 533 | 0.088104853040113% | — | — | — |
| Spermatids | 42 | 0.0069425962995962% | — | — | — |
| Endothelial cells | 18,847 | 3.1154074394878% | — | — | — |
| Ascending loop of Henle cells | 1,190 | 0.19670689515522% | — | — | — |
| Intercalated cells | 784 | 0.1295951309258% | — | — | — |
100 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 68740 | 11.3627 | Immune cells | #FFCA28 |
| celltype | Oligodendrocytes | 55441 | 9.1644 | Neural cells | #9CCC65 |
| celltype | Excitatory neurons | 53793 | 8.892 | Neural cells | #4CAF50 |
| celltype | Inhibitory neurons | 37307 | 6.1668 | Neural cells | #26A69A |
| celltype | Monocytes | 26230 | 4.3358 | Immune cells | #D4E157 |
| celltype | Type II myonuclei | 23324 | 3.8555 | Muscle cells | #BC8F8F |
| celltype | B cells | 22355 | 3.6953 | Immune cells | #66BB6A |
| celltype | Macrophages | 19007 | 3.1419 | Immune cells | #5C6BC0 |
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