ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys01
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP101_sys/sys01/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
202,840
Cells represented in this release
🧬
Total Genes
16,479
Genes represented in the source matrix
🔷
Cell Types
30
Annotated cell-type groups
🫀
Tissues
12
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 55,441 | 27.332380201144% | — | — | — |
| Excitatory neurons | 53,793 | 26.519917176099% | — | — | — |
| Inhibitory neurons | 37,307 | 18.392328929205% | — | — | — |
| Astrocytes | 11,409 | 5.6246302504437% | — | — | — |
| Microglia | 10,393 | 5.1237428515086% | — | — | — |
| Granule cells | 7,151 | 3.5254387694735% | — | — | — |
| Oligodendrocyte progenitor cells | 5,008 | 2.4689410372708% | — | — | — |
| Amacrine cells | 2,520 | 1.2423585091698% | — | — | — |
| Cone cells | 2,321 | 1.144251626898% | — | — | — |
| Muller cells | 1,717 | 0.84647998422402% | — | — | — |
| Bipolar cells | 1,602 | 0.78978505225794% | — | — | — |
| Ganglion cells | 1,014 | 0.49990140011832% | — | — | — |
| Rod cells | 653 | 0.32192861368566% | — | — | — |
| Purkinje cells | 544 | 0.26819167816999% | — | — | — |
| Melanocytes | 471 | 0.23220272135673% | — | — | — |
| Glial cells | 109 | 0.053736935515677% | — | — | — |
| Schwann cells | 52 | 0.025635969236837% | — | — | — |
| Macrophages | 3,164 | 1.5598501281798% | — | — | — |
| T cells | 143 | 0.070498915401302% | — | — | — |
| Retinal pigmentary epithelial cells | 523 | 0.25783869059357% | — | — | — |
| Choroid plexus | 125 | 0.061624926050089% | — | — | — |
| Ependymal cells | 94 | 0.046341944389667% | — | — | — |
| Ciliated cells | 29 | 0.014296982843621% | — | — | — |
| Fibroblasts | 1,868 | 0.92092289489253% | — | — | — |
| Adipocytes | 1,743 | 0.85929796884244% | — | — | — |
| Epineurial cells | 973 | 0.47968842437389% | — | — | — |
| Pericytes | 435 | 0.21445474265431% | — | — | — |
| Other stromal cells | 174 | 0.085781897061724% | — | — | — |
| Smooth muscle cells | 291 | 0.14346282784461% | — | — | — |
| Endothelial cells | 1,773 | 0.87408795109446% | — | — | — |
30 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Oligodendrocytes | 55441 | 27.3324 | Neural cells | #9CCC65 |
| celltype | Excitatory neurons | 53793 | 26.5199 | Neural cells | #4CAF50 |
| celltype | Inhibitory neurons | 37307 | 18.3923 | Neural cells | #26A69A |
| celltype | Astrocytes | 11409 | 5.6246 | Neural cells | #26A69A |
| celltype | Microglia | 10393 | 5.1237 | Neural cells | #8D6E63 |
| celltype | Granule cells | 7151 | 3.5254 | Neural cells | #9370DB |
| celltype | Oligodendrocyte progenitor cells | 5008 | 2.4689 | Neural cells | #FF8A65 |
| celltype | Macrophages | 3164 | 1.5599 | Immune cells | #5C6BC0 |
First 8 rows