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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics System › sys02

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP101 System: sys02 Generated: 2026-08-08 07:47
๐Ÿ“ analysis_results_v2/SP101_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
🔬
96,140
Total Cells
🧬
16,479
Total Genes
🔷
16
Cell Types
🫀
5
Tissues
📦
N/A
Samples
N/A: Not exported by the post-QC descriptive statistics pipeline.
📊
N/A
Clusters
N/A: Not exported by the post-QC descriptive statistics pipeline.
⚡
N/A
Mito %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🧪
N/A
Ribo %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🚫
N/A
Cells Filtered
N/A: Validated Raw Count Thresholds Not Available.
✅
N/A
Pass Rate
N/A: Validated Raw Count Thresholds Not Available.
๐Ÿ“‹ Overview ๐Ÿ“Š QC Metrics ๐Ÿ—บ๏ธ UMAP ๐Ÿงฉ Composition ๐Ÿงฌ Markers ๐Ÿ“ˆ Gene Stats ๐Ÿ“ Data 2
📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬
Total Cells
96,140
Cells represented in this release
🧬
Total Genes
16,479
Genes represented in the source matrix
🔷
Cell Types
16
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

๐Ÿ”ท Cell Type / Cluster Breakdown

NameCells%Med GenesMed CountsMed Mito%
T cells27,47928.582275847722%———
Monocytes21,80522.680465987102%———
B cells20,68721.517578531309%———
Neutrophils17,41118.11004784689%———
Erythroid cells2,1992.2872893696692%———
Plasma B cells1,9832.0626170168504%———
Macrophages1,9061.9825254836696%———
Dendritic cells6070.63137091741211%———
Cycling B cells5800.60328687330976%———
Hematopoietic stem and progenitor cells2970.30892448512586%———
Common myeloid progenitors2370.24651549823175%———
Natural killer cells1580.16434366548783%———
Mast cells980.10193467859372%———
Basophils730.075930934054504%———
Cycling T cells560.058248387767839%———
Endothelial cells5640.58664447680466%———
16 groups
๐Ÿ“Š

QC MetricsInteractive boxplots and scatter plots

๐Ÿ“ Distribution Summary

MetricMinQ1MedianMeanQ3MaxStd

๐ŸŽป Genes/Cell BOXPLOT

๐ŸŽป Counts/Cell BOXPLOT

๐ŸŽป Mito % BOXPLOT

๐ŸŽป Ribo % BOXPLOT

๐Ÿ”ฌ Genes vs Counts SCATTER

๐Ÿ—บ๏ธ

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

๐Ÿ—บ๏ธ UMAP by Group INTERACTIVE

๐Ÿงฉ

Cell CompositionCell type proportions overall and per sample

๐Ÿฅง Overall PIE

๐Ÿ“Š Per-sample STACKED BAR

๐Ÿงฌ

Marker GenesTop markers per cluster and expression heatmap

๐Ÿ”ฅ Expression Heatmap Z-SCORE

๐Ÿ“ˆ

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

๐Ÿ† Top Expressed BAR

๐Ÿ“

Data FilesDownload QC data tables

๐Ÿ“‹ Available Files

FileDescriptionAction
composition.csvComposition๐Ÿ“ฅ Download
gene_stats.csvGene Stats๐Ÿ“ฅ Download

๐Ÿ“‹ Preview: composition.csv

๐Ÿ“ฅ Full CSV
groupinggroupcountpctcategorycolor
celltypeT cells2747928.5823Immune cells#FFCA28
celltypeMonocytes2180522.6805Immune cells#D4E157
celltypeB cells2068721.5176Immune cells#66BB6A
celltypeNeutrophils1741118.11Immune cells#00ACC1
celltypeErythroid cells21992.2873Immune cells#F44336
celltypePlasma B cells19832.0626Immune cells#E91E63
celltypeMacrophages19061.9825Immune cells#5C6BC0
celltypeDendritic cells6070.6314Immune cells#FF8A65
First 8 rows