ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP101_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
128,087
Cells represented in this release
🧬
Total Genes
16,479
Genes represented in the source matrix
🔷
Cell Types
39
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 134 | 0.10461639354501% | — | — | — |
| Enteric neurons | 20 | 0.015614387096271% | — | — | — |
| T cells | 37,729 | 29.455760537759% | — | — | — |
| Dendritic cells | 4,488 | 3.5038684644031% | — | — | — |
| Macrophages | 3,841 | 2.9987430418388% | — | — | — |
| Monocytes | 3,634 | 2.8371341353924% | — | — | — |
| Natural killer T cells | 3,512 | 2.7418863741051% | — | — | — |
| Kupffer cells | 2,392 | 1.867480696714% | — | — | — |
| Pancreas islet cells | 2,243 | 1.7511535128467% | — | — | — |
| B cells | 972 | 0.75885921287875% | — | — | — |
| Goblet cells | 491 | 0.38333320321344% | — | — | — |
| Plasma B cells | 341 | 0.26622529999141% | — | — | — |
| Mast cells | 241 | 0.18815336451006% | — | — | — |
| Cycling T cells | 48 | 0.037474529031049% | — | — | — |
| Pancreas ductal cells | 15,377 | 12.005121518968% | — | — | — |
| Acinar cells | 6,666 | 5.204275219187% | — | — | — |
| Mucous cells | 4,746 | 3.705294057945% | — | — | — |
| Enterocytes | 3,992 | 3.1166316644156% | — | — | — |
| Basal cells | 3,937 | 3.0736920999008% | — | — | — |
| Hepatocytes | 2,710 | 2.1157494515447% | — | — | — |
| Glandular cells | 2,154 | 1.6816694902683% | — | — | — |
| Serous cells | 1,174 | 0.91656452255108% | — | — | — |
| Taste cells | 775 | 0.60505749998048% | — | — | — |
| Cycling basal cells | 450 | 0.35132370966609% | — | — | — |
| Cycling gastric epithelial cell | 370 | 0.288866161281% | — | — | — |
| Cycling epithelial cells | 318 | 0.2482687548307% | — | — | — |
| Parietal cells | 35 | 0.027325177418473% | — | — | — |
| Squamous cells | 34 | 0.02654445806366% | — | — | — |
| Cholangiocytes | 28 | 0.021860141934779% | — | — | — |
| Neuroendocrine cells | 14 | 0.010930070967389% | — | — | — |
| Other stromal cells | 12,338 | 9.6325153996893% | — | — | — |
| Stellate cells | 1,734 | 1.3537673612467% | — | — | — |
| Fibroblasts | 1,163 | 0.90797660964813% | — | — | — |
| Adipocytes | 33 | 0.025763738708846% | — | — | — |
| Smooth muscle cells | 2,804 | 2.1891370708971% | — | — | — |
| Type II myonuclei | 2,376 | 1.8549891870369% | — | — | — |
| Satellite cells | 83 | 0.064799706449523% | — | — | — |
| Endothelial cells | 4,604 | 3.5944319095615% | — | — | — |
| Intercalated cells | 86 | 0.067141864513963% | — | — | — |
39 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 37729 | 29.4558 | Immune cells | #FFCA28 |
| celltype | Pancreas ductal cells | 15377 | 12.0051 | Epithelial cells | #BA68C8 |
| celltype | Other stromal cells | 12338 | 9.6325 | Stromal cells | #008B8B |
| celltype | Acinar cells | 6666 | 5.2043 | Epithelial cells | #4CAF50 |
| celltype | Mucous cells | 4746 | 3.7053 | Epithelial cells | #7E57C2 |
| celltype | Endothelial cells | 4604 | 3.5944 | Endothelial cells | #BA68C8 |
| celltype | Dendritic cells | 4488 | 3.5039 | Immune cells | #FF8A65 |
| celltype | Enterocytes | 3992 | 3.1166 | Epithelial cells | #26C6DA |
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