ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP101_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
48,210
Cells represented in this release
🧬
Total Genes
16,479
Genes represented in the source matrix
🔷
Cell Types
20
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 5,372 | 11.142916407384% | — | — | — |
| Microglia | 583 | 1.2092926778677% | — | — | — |
| Macrophages | 1,804 | 3.7419622484962% | — | — | — |
| Natural killer T cells | 1,037 | 2.1510060153495% | — | — | — |
| Dendritic cells | 866 | 1.7963078199544% | — | — | — |
| B cells | 696 | 1.4436838830118% | — | — | — |
| T cells | 306 | 0.63472308649658% | — | — | — |
| Monocytes | 68 | 0.14104957477702% | — | — | — |
| Fasciculata cells | 6,084 | 12.619788425638% | — | — | — |
| Follicular cells | 5,344 | 11.084837170711% | — | — | — |
| Corticotropes | 5,066 | 10.508193320888% | — | — | — |
| Somatotropes | 3,263 | 6.7683053308442% | — | — | — |
| Lactotropes | 3,215 | 6.6687409251193% | — | — | — |
| Gonadotropes | 284 | 0.58908940053931% | — | — | — |
| Adipocytes | 8,183 | 16.973656917652% | — | — | — |
| Fibroblasts | 1,401 | 2.9060360920971% | — | — | — |
| Other stromal cells | 1,033 | 2.1427089815391% | — | — | — |
| Folliculostellate cells | 667 | 1.3835303878863% | — | — | — |
| Smooth muscle cells | 165 | 0.34225264467953% | — | — | — |
| Endothelial cells | 2,773 | 5.7519186890687% | — | — | — |
20 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Adipocytes | 8183 | 16.9737 | Stromal cells | #E91E63 |
| celltype | Fasciculata cells | 6084 | 12.6198 | Epithelial cells | #4B0082 |
| celltype | Chromaffin cells | 5372 | 11.1429 | Neural cells | #FFCA28 |
| celltype | Follicular cells | 5344 | 11.0848 | Epithelial cells | #008B8B |
| celltype | Corticotropes | 5066 | 10.5082 | Epithelial cells | #1E90FF |
| celltype | Somatotropes | 3263 | 6.7683 | Epithelial cells | #C71585 |
| celltype | Lactotropes | 3215 | 6.6687 | Epithelial cells | #66CDAA |
| celltype | Endothelial cells | 2773 | 5.7519 | Endothelial cells | #BA68C8 |
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