ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP105
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP105/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
280,133
Cells represented in this release
🧬
Total Genes
17,379
Genes represented in the source matrix
🔷
Cell Types
54
Annotated cell-type groups
🫀
Tissues
21
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 19,109 | 6.8214026908647% | — | — | — |
| Microglia | 13,623 | 4.8630471954393% | — | — | — |
| Excitatory neurons | 9,640 | 3.4412225621401% | — | — | — |
| Inhibitory neurons | 8,251 | 2.9453866556243% | — | — | — |
| Granule cells | 5,289 | 1.8880317563443% | — | — | — |
| Astrocytes | 4,576 | 1.6335097971321% | — | — | — |
| Rod cells | 3,732 | 1.3322243362974% | — | — | — |
| Muller cells | 2,565 | 0.91563650123334% | — | — | — |
| Cone cells | 2,540 | 0.90671216886265% | — | — | — |
| Oligodendrocyte progenitor cells | 1,811 | 0.64647863693317% | — | — | — |
| Ganglion cells | 1,476 | 0.52689258316585% | — | — | — |
| Purkinje cells | 726 | 0.25916261204499% | — | — | — |
| Amacrine cells | 721 | 0.25737774557085% | — | — | — |
| Bipolar cells | 346 | 0.12351276001042% | — | — | — |
| T cells | 33,315 | 11.892565317189% | — | — | — |
| Plasma B cells | 25,952 | 9.2641709473714% | — | — | — |
| B cells | 18,710 | 6.6789703462284% | — | — | — |
| Macrophages | 14,701 | 5.2478644072637% | — | — | — |
| Monocytes | 10,022 | 3.5775863607644% | — | — | — |
| Kupffer cells | 8,887 | 3.1724216711348% | — | — | — |
| Natural killer cells | 3,523 | 1.2576169176784% | — | — | — |
| Dendritic cells | 1,249 | 0.44585964523994% | — | — | — |
| Goblet cells | 710 | 0.25345103932775% | — | — | — |
| Erythroid cells | 679 | 0.24238486718809% | — | — | — |
| Mast cells | 340 | 0.12137092024146% | — | — | — |
| Cycling T cells | 272 | 0.097096736193165% | — | — | — |
| Platelets | 70 | 0.024988130637947% | — | — | — |
| Neutrophils | 55 | 0.01963353121553% | — | — | — |
| Hepatocytes | 11,068 | 3.9509804271542% | — | — | — |
| Cycling epithelial cells | 7,510 | 2.6808694441569% | — | — | — |
| Alveolar type 2 cells | 6,650 | 2.373872410605% | — | — | — |
| Enterocytes | 3,746 | 1.337221962425% | — | — | — |
| Proximal tubule cells | 2,306 | 0.82318041787294% | — | — | — |
| Enteroendocrine cells | 1,008 | 0.35982908118644% | — | — | — |
| Ciliated cells | 900 | 0.32127596534503% | — | — | — |
| Alveolar type 1 cells | 750 | 0.26772997112086% | — | — | — |
| Peritubular myoid cells | 593 | 0.21168516383289% | — | — | — |
| Podocytes | 78 | 0.027843916996569% | — | — | — |
| Ependymal cells | 16 | 0.005711572717245% | — | — | — |
| Fibroblasts | 15,369 | 5.4863225682087% | — | — | — |
| Pericytes | 1,450 | 0.51761127750033% | — | — | — |
| Leydig cells | 894 | 0.31913412557607% | — | — | — |
| Mesothelial cells | 332 | 0.11851513388283% | — | — | — |
| Other stromal cells | 288 | 0.10280830891041% | — | — | — |
| Stellate cells | 261 | 0.093170029950059% | — | — | — |
| Cardiomyocytes | 2,254 | 0.80461780654189% | — | — | — |
| Smooth muscle cells | 586 | 0.2091863507691% | — | — | — |
| Spermatids | 9,972 | 3.559737696023% | — | — | — |
| Spermatogonia | 2,762 | 0.98596024031442% | — | — | — |
| Spermatocytes | 723 | 0.25809169216051% | — | — | — |
| Endothelial cells | 16,571 | 5.9154044685917% | — | — | — |
| Ascending loop of Henle cells | 578 | 0.20633056441048% | — | — | — |
| Principal cells | 412 | 0.14707299746906% | — | — | — |
| Intercalated cells | 166 | 0.059257566941417% | — | — | — |
54 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 33315 | 11.8926 | Immune cells | #EF5350 |
| celltype | Plasma B cells | 25952 | 9.2642 | Immune cells | #66BB6A |
| celltype | Oligodendrocytes | 19109 | 6.8214 | Neural cells | #FFA726 |
| celltype | B cells | 18710 | 6.679 | Immune cells | #AB47BC |
| celltype | Endothelial cells | 16571 | 5.9154 | Endothelial cells | #FF7043 |
| celltype | Fibroblasts | 15369 | 5.4863 | Stromal cells | #8D6E63 |
| celltype | Macrophages | 14701 | 5.2479 | Immune cells | #BA68C8 |
| celltype | Microglia | 13623 | 4.863 | Neural cells | #F44336 |
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