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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics System › sys05

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP105 System: sys05 Generated: 2026-08-08 07:47
๐Ÿ“ analysis_results_v2/SP105_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
🔬
98,373
Total Cells
🧬
17,379
Total Genes
🔷
16
Cell Types
🫀
3
Tissues
📦
N/A
Samples
N/A: Not exported by the post-QC descriptive statistics pipeline.
📊
N/A
Clusters
N/A: Not exported by the post-QC descriptive statistics pipeline.
⚡
N/A
Mito %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🧪
N/A
Ribo %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🚫
N/A
Cells Filtered
N/A: Validated Raw Count Thresholds Not Available.
✅
N/A
Pass Rate
N/A: Validated Raw Count Thresholds Not Available.
๐Ÿ“‹ Overview ๐Ÿ“Š QC Metrics ๐Ÿ—บ๏ธ UMAP ๐Ÿงฉ Composition ๐Ÿงฌ Markers ๐Ÿ“ˆ Gene Stats ๐Ÿ“ Data 2
📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬
Total Cells
98,373
Cells represented in this release
🧬
Total Genes
17,379
Genes represented in the source matrix
🔷
Cell Types
16
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

๐Ÿ”ท Cell Type / Cluster Breakdown

NameCells%Med GenesMed CountsMed Mito%
Plasma B cells24,28324.684618747014%———
T cells16,11616.382543990729%———
B cells15,24915.501204598823%———
Kupffer cells8,8879.0339829018125%———
Monocytes5,5435.6346761814726%———
Dendritic cells7430.75528854462098%———
Goblet cells7100.72174275461763%———
Macrophages5440.55299726550985%———
Hepatocytes11,06811.251054659307%———
Cycling epithelial cells7,5107.6342085734907%———
Enterocytes3,7463.8079554349262%———
Enteroendocrine cells1,0081.0246714037388%———
Fibroblasts9200.93521596372989%———
Stellate cells2610.2653167027538%———
Smooth muscle cells5860.5956919073323%———
Endothelial cells1,1991.2188303701219%———
16 groups
๐Ÿ“Š

QC MetricsInteractive boxplots and scatter plots

๐Ÿ“ Distribution Summary

MetricMinQ1MedianMeanQ3MaxStd

๐ŸŽป Genes/Cell BOXPLOT

๐ŸŽป Counts/Cell BOXPLOT

๐ŸŽป Mito % BOXPLOT

๐ŸŽป Ribo % BOXPLOT

๐Ÿ”ฌ Genes vs Counts SCATTER

๐Ÿ—บ๏ธ

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

๐Ÿ—บ๏ธ UMAP by Group INTERACTIVE

๐Ÿงฉ

Cell CompositionCell type proportions overall and per sample

๐Ÿฅง Overall PIE

๐Ÿ“Š Per-sample STACKED BAR

๐Ÿงฌ

Marker GenesTop markers per cluster and expression heatmap

๐Ÿ”ฅ Expression Heatmap Z-SCORE

๐Ÿ“ˆ

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

๐Ÿ† Top Expressed BAR

๐Ÿ“

Data FilesDownload QC data tables

๐Ÿ“‹ Available Files

FileDescriptionAction
composition.csvComposition๐Ÿ“ฅ Download
gene_stats.csvGene Stats๐Ÿ“ฅ Download

๐Ÿ“‹ Preview: composition.csv

๐Ÿ“ฅ Full CSV
groupinggroupcountpctcategorycolor
celltypePlasma B cells2428324.6846Immune cells#66BB6A
celltypeT cells1611616.3825Immune cells#EF5350
celltypeB cells1524915.5012Immune cells#AB47BC
celltypeHepatocytes1106811.2511Epithelial cells#7E57C2
celltypeKupffer cells88879.034Immune cells#FF8A65
celltypeCycling epithelial cells75107.6342Epithelial cells#87CEFA
celltypeMonocytes55435.6347Immune cells#4CAF50
celltypeEnterocytes37463.808Epithelial cells#5C6BC0
First 8 rows