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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics Tissue › sys02tis03

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP105 Tissue: sys02tis03 Generated: 2026-08-08 07:47

📁 analysis_results_v2/SP105_tis/sys02tis03/releases/r20260808-v4/modules/stats

Scope: post_qc_descriptive / Source: validated immutable release

Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.

🔬

9,965

Total Cells

🧬

17,379

Total Genes

🔷

8

Cell Types

🫀

1

Tissues

📦

N/A

Samples

N/A: Not exported by the post-QC descriptive statistics pipeline.

📊

N/A

Clusters

N/A: Not exported by the post-QC descriptive statistics pipeline.

⚡

N/A

Mito %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🧪

N/A

Ribo %

N/A: Not exported by the post-QC descriptive statistics pipeline.

🚫

N/A

Cells Filtered

N/A: Validated Raw Count Thresholds Not Available.

✅

N/A

Pass Rate

N/A: Validated Raw Count Thresholds Not Available.

📋 Overview 📊 QC Metrics 🗺️ UMAP 🧩 Composition 🧬 Markers 📈 Gene Stats 📁 Data 2

📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬

Total Cells

9,965

Cells represented in this release

🧬

Total Genes

17,379

Genes represented in the source matrix

🔷

Cell Types

8

Annotated cell-type groups

🫀

Tissues

1

Annotated tissue groups

📦

Samples

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Clusters

N/A

Not exported by the post-QC descriptive statistics pipeline.

📊

Median Genes/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

📈

Median Counts/Cell

N/A

Not exported by the post-QC descriptive statistics pipeline.

⚡

Mito %

N/A

Not exported by the post-QC descriptive statistics pipeline.

🧪

Ribo %

N/A

Not exported by the post-QC descriptive statistics pipeline.

✅

Cells Passing

N/A

Validated Raw Count Thresholds Not Available.

🚫

Cells Filtered

N/A

Validated Raw Count Thresholds Not Available.

✅

Pass Rate

N/A

Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

🔷 Cell Type / Cluster Breakdown

Name	Cells	%	Med Genes	Med Counts	Med Mito%
T cells	5,224	52.423482187657%	—	—	—
Natural killer cells	1,848	18.544907175113%	—	—	—
Monocytes	1,319	13.236327145008%	—	—	—
B cells	1,171	11.75112895133%	—	—	—
Plasma B cells	144	1.4450577019568%	—	—	—
Cycling T cells	143	1.4350225790266%	—	—	—
Platelets	70	0.70245860511791%	—	—	—
Erythroid cells	46	0.46161565479177%	—	—	—

8 groups

📊

QC MetricsInteractive boxplots and scatter plots

📐 Distribution Summary

Metric	Min	Q1	Median	Mean	Q3	Max	Std

🎻 Genes/Cell BOXPLOT

🎻 Counts/Cell BOXPLOT

🎻 Mito % BOXPLOT

🎻 Ribo % BOXPLOT

🔬 Genes vs Counts SCATTER

🗺️

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

🗺️ UMAP by Group INTERACTIVE

🧩

Cell CompositionCell type proportions overall and per sample

🥧 Overall PIE

📊 Per-sample STACKED BAR

🧬

Marker GenesTop markers per cluster and expression heatmap

🔥 Expression Heatmap Z-SCORE

📈

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

🏆 Top Expressed BAR

📁

Data FilesDownload QC data tables

📋 Available Files

File	Description	Action
composition.csv	Composition	📥 Download
gene_stats.csv	Gene Stats	📥 Download

📋 Preview: composition.csv

grouping	group	count	pct	category	color
celltype	T cells	5224	52.4235	Immune cells	#EF5350
celltype	Natural killer cells	1848	18.5449	Immune cells	#DB7093
celltype	Monocytes	1319	13.2363	Immune cells	#4CAF50
celltype	B cells	1171	11.7511	Immune cells	#AB47BC
celltype	Plasma B cells	144	1.4451	Immune cells	#66BB6A
celltype	Cycling T cells	143	1.435	Immune cells	#2E7D32
celltype	Platelets	70	0.7025	Immune cells	#2E7D32
celltype	Erythroid cells	46	0.4616	Immune cells	#EC407A

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