ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP115
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP115/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
72,588
Cells represented in this release
🧬
Total Genes
14,276
Genes represented in the source matrix
🔷
Cell Types
28
Annotated cell-type groups
🫀
Tissues
9
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 179 | 0.24659723370254% | — | — | — |
| Enteric neuronal progenitor cells | 37 | 0.050972612553039% | — | — | — |
| Enteric neurons | 8 | 0.011021105416873% | — | — | — |
| Macrophages | 4,385 | 6.0409434066237% | — | — | — |
| Dendritic cells | 363 | 0.50008265829063% | — | — | — |
| B cells | 317 | 0.4367113021436% | — | — | — |
| T cells | 276 | 0.38022813688213% | — | — | — |
| Ciliated cells | 4,605 | 6.3440238055877% | — | — | — |
| Alveolar type 1 cells | 3,339 | 4.5999338733675% | — | — | — |
| Hepatocytes | 2,180 | 3.003251226098% | — | — | — |
| Alveolar type 2 cells | 1,568 | 2.1601366617072% | — | — | — |
| Proximal tubule cells | 1,379 | 1.8997630462335% | — | — | — |
| Enterocytes | 871 | 1.1999228522621% | — | — | — |
| Squamous cells | 685 | 0.94368215131978% | — | — | — |
| Podocytes | 293 | 0.40364798589299% | — | — | — |
| Distal convoluted tubule cells | 250 | 0.34440954427729% | — | — | — |
| Mucous cells | 205 | 0.28241582630738% | — | — | — |
| Cholangiocytes | 86 | 0.11847688323139% | — | — | — |
| Fibroblasts | 3,530 | 4.8630627651953% | — | — | — |
| Pericytes | 956 | 1.3170220973164% | — | — | — |
| Stellate cells | 46 | 0.063371356147022% | — | — | — |
| Smooth muscle cells | 19,185 | 26.429988427839% | — | — | — |
| Cardiomyocytes | 8,632 | 11.891772744806% | — | — | — |
| Endothelial cells | 17,356 | 23.910288201907% | — | — | — |
| Ascending loop of Henle cells | 829 | 1.1420620488235% | — | — | — |
| Gastric stem cells | 358 | 0.49319446740508% | — | — | — |
| Intercalated cells | 356 | 0.49043919105086% | — | — | — |
| Principal cells | 314 | 0.43257838761228% | — | — | — |
28 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Smooth muscle cells | 19185 | 26.43 | Muscle cells | #BA68C8 |
| celltype | Endothelial cells | 17356 | 23.9103 | Endothelial cells | #78909C |
| celltype | Cardiomyocytes | 8632 | 11.8918 | Muscle cells | #AB47BC |
| celltype | Ciliated cells | 4605 | 6.344 | Epithelial cells | #26A69A |
| celltype | Macrophages | 4385 | 6.0409 | Immune cells | #D4E157 |
| celltype | Fibroblasts | 3530 | 4.8631 | Stromal cells | #FFCA28 |
| celltype | Alveolar type 1 cells | 3339 | 4.5999 | Epithelial cells | #4CAF50 |
| celltype | Hepatocytes | 2180 | 3.0033 | Epithelial cells | #29B6F6 |
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