ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP115_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
34,816
Cells represented in this release
🧬
Total Genes
14,276
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 179 | 0.51413143382353% | — | — | — |
| Enteric neuronal progenitor cells | 37 | 0.10627297794118% | — | — | — |
| Enteric neurons | 8 | 0.022977941176471% | — | — | — |
| Dendritic cells | 333 | 0.95645680147059% | — | — | — |
| Macrophages | 304 | 0.87316176470588% | — | — | — |
| T cells | 209 | 0.60029871323529% | — | — | — |
| B cells | 118 | 0.33892463235294% | — | — | — |
| Hepatocytes | 2,180 | 6.2614889705882% | — | — | — |
| Enterocytes | 871 | 2.5017233455882% | — | — | — |
| Squamous cells | 685 | 1.9674862132353% | — | — | — |
| Mucous cells | 205 | 0.58880974264706% | — | — | — |
| Cholangiocytes | 86 | 0.24701286764706% | — | — | — |
| Fibroblasts | 1,223 | 3.5127527573529% | — | — | — |
| Pericytes | 956 | 2.7458639705882% | — | — | — |
| Stellate cells | 46 | 0.13212316176471% | — | — | — |
| Smooth muscle cells | 19,185 | 55.103975183824% | — | — | — |
| Endothelial cells | 7,833 | 22.498276654412% | — | — | — |
| Gastric stem cells | 358 | 1.0282628676471% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Smooth muscle cells | 19185 | 55.104 | Muscle cells | #BA68C8 |
| celltype | Endothelial cells | 7833 | 22.4983 | Endothelial cells | #78909C |
| celltype | Hepatocytes | 2180 | 6.2615 | Epithelial cells | #29B6F6 |
| celltype | Fibroblasts | 1223 | 3.5128 | Stromal cells | #FFCA28 |
| celltype | Pericytes | 956 | 2.7459 | Stromal cells | #EF5350 |
| celltype | Enterocytes | 871 | 2.5017 | Epithelial cells | #5C6BC0 |
| celltype | Squamous cells | 685 | 1.9675 | Epithelial cells | #DB7093 |
| celltype | Gastric stem cells | 358 | 1.0283 | Other | #EC407A |
First 8 rows