ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP121
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
1,246,365
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
107
Annotated cell-type groups
🫀
Tissues
47
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 50,763 | 4.0728839465165% | — | — | — |
| Excitatory neurons | 45,096 | 3.6182017306327% | — | — | — |
| Inhibitory neurons | 41,926 | 3.3638621110188% | — | — | — |
| Granule cells | 23,771 | 1.9072262138298% | — | — | — |
| Astrocytes | 20,075 | 1.6106838686902% | — | — | — |
| Microglia | 13,681 | 1.097672030264% | — | — | — |
| Schwann cells | 9,823 | 0.78813188752893% | — | — | — |
| Oligodendrocyte progenitor cells | 9,100 | 0.73012319826054% | — | — | — |
| Rod cells | 1,637 | 0.13134194236841% | — | — | — |
| Enteric glial cells | 973 | 0.078067018890935% | — | — | — |
| Bipolar cells | 79 | 0.0063384321607234% | — | — | — |
| Muller cells | 69 | 0.0055360989758217% | — | — | — |
| Enteric neurons | 46 | 0.0036907326505478% | — | — | — |
| T cells | 172,870 | 13.869933767396% | — | — | — |
| B cells | 122,701 | 9.8447084120623% | — | — | — |
| Macrophages | 84,876 | 6.8098831401716% | — | — | — |
| Monocytes | 77,497 | 6.2178414830327% | — | — | — |
| Neutrophils | 21,396 | 1.7166720824157% | — | — | — |
| Natural killer T cells | 21,060 | 1.689713687403% | — | — | — |
| Plasma B cells | 20,394 | 1.6362782972885% | — | — | — |
| Natural killer cells | 13,873 | 1.1130768274141% | — | — | — |
| Erythroid cells | 12,887 | 1.0339667753828% | — | — | — |
| Cycling B cells | 6,763 | 0.54261793294902% | — | — | — |
| Dendritic cells | 6,128 | 0.49166977570776% | — | — | — |
| Thymocytes | 5,664 | 0.45444151592832% | — | — | — |
| Mast cells | 3,561 | 0.28571084714349% | — | — | — |
| Kupffer cells | 1,957 | 0.15701660428526% | — | — | — |
| Platelets | 814 | 0.065309921250998% | — | — | — |
| Hematopoietic stem and progenitor cells | 780 | 0.062581988422332% | — | — | — |
| Common myeloid progenitors | 376 | 0.030167727752304% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 329 | 0.026396761783266% | — | — | — |
| Cycling T cells | 208 | 0.016688530245955% | — | — | — |
| Granulocytes | 100 | 0.0080233318490169% | — | — | — |
| Basophils | 61 | 0.0048942324279003% | — | — | — |
| Luminal epithelial cells | 22,063 | 1.7701877058486% | — | — | — |
| Basal cells | 19,841 | 1.5919092721635% | — | — | — |
| Cycling epithelial cells | 15,472 | 1.2413699036799% | — | — | — |
| Urothelial cells | 13,016 | 1.044316873468% | — | — | — |
| Enterocytes | 9,694 | 0.7777817894437% | — | — | — |
| Serous cells | 9,050 | 0.72611153233603% | — | — | — |
| Alveolar type 2 cells | 6,101 | 0.48950347610852% | — | — | — |
| Proximal tubule cells | 5,808 | 0.4659951137909% | — | — | — |
| Mesothelial cells | 4,034 | 0.32366120678934% | — | — | — |
| Keratinocytes | 3,938 | 0.31595880821429% | — | — | — |
| Mucous cells | 3,505 | 0.28121778130804% | — | — | — |
| Club cells | 3,241 | 0.26003618522664% | — | — | — |
| Acinar cells | 3,157 | 0.25329658647346% | — | — | — |
| Goblet cells | 3,047 | 0.24447092143955% | — | — | — |
| Hepatocytes | 2,712 | 0.21759275974534% | — | — | — |
| Pancreas ductal cells | 1,640 | 0.13158264232388% | — | — | — |
| Principal cells | 1,484 | 0.11906624463941% | — | — | — |
| Melanocytes | 1,451 | 0.11641854512924% | — | — | — |
| Ependymal cells | 1,364 | 0.10943824642059% | — | — | — |
| Retinal pigmentary epithelial cells | 1,353 | 0.1085556799172% | — | — | — |
| Surface epithelial cells | 1,166 | 0.093552049359538% | — | — | — |
| Ciliated cells | 825 | 0.06619248775439% | — | — | — |
| Ascending loop of Henle cells | 761 | 0.061057555371019% | — | — | — |
| Glandular cells | 724 | 0.058088922586883% | — | — | — |
| Intercalated cells | 696 | 0.055842389669158% | — | — | — |
| Follicular cells | 554 | 0.044449258443554% | — | — | — |
| Squamous cells | 539 | 0.043245758666201% | — | — | — |
| Taste cells | 496 | 0.039795725971124% | — | — | — |
| Alveolar type 1 cells | 469 | 0.037629426371889% | — | — | — |
| Cholangiocytes | 445 | 0.035703826728125% | — | — | — |
| Supporting cells of vestibular epithelium | 216 | 0.017330396793877% | — | — | — |
| Medullary thymus epithelial cells | 190 | 0.015244330513132% | — | — | — |
| Cycling gastric epithelial cell | 168 | 0.013479197506348% | — | — | — |
| Connecting tubule cells | 149 | 0.011954764455035% | — | — | — |
| Pancreas islet cells | 90 | 0.0072209986641152% | — | — | — |
| Podocytes | 63 | 0.0050546990648807% | — | — | — |
| Progenitor-like epithelial cells | 49 | 0.0039314326060183% | — | — | — |
| Vestibular dark cells | 45 | 0.0036104993320576% | — | — | — |
| Parietal cells | 22 | 0.0017651330067837% | — | — | — |
| Choroid plexus | 6 | 0.00048139991094102% | — | — | — |
| Fibroblasts | 58,656 | 4.7061655293594% | — | — | — |
| Other stromal cells | 33,374 | 2.6777067712909% | — | — | — |
| Mesenchymal cells | 21,836 | 1.7519747425513% | — | — | — |
| Theca cells | 13,661 | 1.0960673638942% | — | — | — |
| Pericytes | 13,150 | 1.0550681381457% | — | — | — |
| Adipocytes | 11,862 | 0.95172762393039% | — | — | — |
| Perineurial cells | 6,971 | 0.55930646319497% | — | — | — |
| Endoneurial cells | 4,655 | 0.37348609757174% | — | — | — |
| Homeostatic chondrocytes | 4,518 | 0.36249413293859% | — | — | — |
| Epineurial cells | 2,829 | 0.22698005800869% | — | — | — |
| Precursor fibrocartilage chondrocytes | 2,584 | 0.2073228949786% | — | — | — |
| Effector chondrocytes | 2,284 | 0.18325289943155% | — | — | — |
| Adipocyte progenitor cells | 2,201 | 0.17659353399686% | — | — | — |
| Regulatory chondrocytes | 1,992 | 0.15982477043242% | — | — | — |
| Pre-hypertrophic chondrocytes | 1,476 | 0.11842437809149% | — | — | — |
| Hypertrophic chondrocytes | 1,363 | 0.1093580131021% | — | — | — |
| Proliferative chondrocytes | 963 | 0.077264685706033% | — | — | — |
| Reparative chondrocytes | 914 | 0.073333253100015% | — | — | — |
| Stellate cells | 690 | 0.055360989758217% | — | — | — |
| Tendon cells | 334 | 0.026797928375717% | — | — | — |
| Fibrocartilage chondrocytes | 300 | 0.024069995547051% | — | — | — |
| Peritubular myoid cells | 93 | 0.0074616986195858% | — | — | — |
| Inflammatory chondrocytes | 70 | 0.0056163322943119% | — | — | — |
| Pre-inflammatory chondrocytes | 26 | 0.0020860662807444% | — | — | — |
| Smooth muscle cells | 31,658 | 2.5400263967618% | — | — | — |
| Satellite cells | 7,872 | 0.63159668315461% | — | — | — |
| Cardiomyocytes | 4,328 | 0.34724980242545% | — | — | — |
| Type II myonuclei | 398 | 0.031932860759087% | — | — | — |
| Type I myonuclei | 126 | 0.010109398129761% | — | — | — |
| Spermatids | 2,695 | 0.21622879333101% | — | — | — |
| Spermatocytes | 2,302 | 0.18469709916437% | — | — | — |
| Spermatogonia | 659 | 0.052873756885022% | — | — | — |
| Endothelial cells | 78,547 | 6.3020864674473% | — | — | — |
107 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 172870 | 13.8699 | Immune cells | #DC143C |
| celltype | B cells | 122701 | 9.8447 | Immune cells | #800000 |
| celltype | Macrophages | 84876 | 6.8099 | Immune cells | #E9967A |
| celltype | Endothelial cells | 78547 | 6.3021 | Endothelial cells | #00FFFF |
| celltype | Monocytes | 77497 | 6.2178 | Immune cells | #D02090 |
| celltype | Fibroblasts | 58656 | 4.7062 | Stromal cells | #008000 |
| celltype | Oligodendrocytes | 50763 | 4.0729 | Neural cells | #D8BFD8 |
| celltype | Excitatory neurons | 45096 | 3.6182 | Neural cells | #2E7D32 |
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