ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
147,706
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
35
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 973 | 0.65874101255196% | — | — | — |
| Schwann cells | 89 | 0.060254830541752% | — | — | — |
| Enteric neurons | 46 | 0.031142946122703% | — | — | — |
| T cells | 30,723 | 20.800102907126% | — | — | — |
| Plasma B cells | 9,367 | 6.3416516593774% | — | — | — |
| Macrophages | 8,901 | 6.0261600747431% | — | — | — |
| Monocytes | 6,672 | 4.5170812289277% | — | — | — |
| B cells | 5,811 | 3.9341665199789% | — | — | — |
| Natural killer T cells | 3,501 | 2.3702490081649% | — | — | — |
| Dendritic cells | 2,264 | 1.5327745656913% | — | — | — |
| Kupffer cells | 1,957 | 1.3249292513507% | — | — | — |
| Mast cells | 1,649 | 1.1164069164421% | — | — | — |
| Natural killer cells | 455 | 0.30804435838761% | — | — | — |
| Cycling epithelial cells | 15,403 | 10.42814780713% | — | — | — |
| Enterocytes | 9,694 | 6.5630373850758% | — | — | — |
| Serous cells | 8,457 | 5.7255629426022% | — | — | — |
| Basal cells | 3,853 | 2.6085602480603% | — | — | — |
| Mucous cells | 3,505 | 2.3729570904364% | — | — | — |
| Acinar cells | 3,157 | 2.1373539328125% | — | — | — |
| Hepatocytes | 2,712 | 1.8360797801037% | — | — | — |
| Goblet cells | 2,177 | 1.4738737762853% | — | — | — |
| Pancreas ductal cells | 1,640 | 1.1103137313312% | — | — | — |
| Squamous cells | 539 | 0.36491408608994% | — | — | — |
| Taste cells | 496 | 0.33580220167089% | — | — | — |
| Cholangiocytes | 445 | 0.30127415270876% | — | — | — |
| Cycling gastric epithelial cell | 168 | 0.11373945540466% | — | — | — |
| Pancreas islet cells | 90 | 0.060931851109637% | — | — | — |
| Parietal cells | 22 | 0.014894452493467% | — | — | — |
| Mesothelial cells | 8 | 0.0054161645430788% | — | — | — |
| Other stromal cells | 7,504 | 5.0803623414079% | — | — | — |
| Fibroblasts | 2,625 | 1.7771789906977% | — | — | — |
| Stellate cells | 690 | 0.46714419184055% | — | — | — |
| Smooth muscle cells | 3,230 | 2.1867764342681% | — | — | — |
| Satellite cells | 157 | 0.10629222915792% | — | — | — |
| Endothelial cells | 8,726 | 5.9076814753632% | — | — | — |
35 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 30723 | 20.8001 | Immune cells | #DC143C |
| celltype | Cycling epithelial cells | 15403 | 10.4281 | Epithelial cells | #87CEFA |
| celltype | Enterocytes | 9694 | 6.563 | Epithelial cells | #483D8B |
| celltype | Plasma B cells | 9367 | 6.3417 | Immune cells | #FFB6C1 |
| celltype | Macrophages | 8901 | 6.0262 | Immune cells | #E9967A |
| celltype | Endothelial cells | 8726 | 5.9077 | Endothelial cells | #00FFFF |
| celltype | Serous cells | 8457 | 5.7256 | Epithelial cells | #FF1493 |
| celltype | Other stromal cells | 7504 | 5.0804 | Stromal cells | #008B8B |
First 8 rows