ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys06tis10
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121_tis/sys06tis10/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
27,841
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
13
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 3,399 | 12.208613196365% | — | — | — |
| Macrophages | 649 | 2.3310944290794% | — | — | — |
| Plasma B cells | 281 | 1.0093028267663% | — | — | — |
| Mast cells | 37 | 0.13289752523257% | — | — | — |
| Natural killer T cells | 14 | 0.050285550088% | — | — | — |
| B cells | 13 | 0.046693725081714% | — | — | — |
| Basophils | 12 | 0.043101900075428% | — | — | — |
| Natural killer cells | 6 | 0.021550950037714% | — | — | — |
| Luminal epithelial cells | 14,529 | 52.185625516325% | — | — | — |
| Basal cells | 1,785 | 6.41140763622% | — | — | — |
| Fibroblasts | 5,116 | 18.375776732158% | — | — | — |
| Smooth muscle cells | 555 | 1.9934628784886% | — | — | — |
| Endothelial cells | 1,445 | 5.1901871340828% | — | — | — |
13 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Luminal epithelial cells | 14529 | 52.1856 | Epithelial cells | #4682B4 |
| celltype | Fibroblasts | 5116 | 18.3758 | Stromal cells | #008000 |
| celltype | T cells | 3399 | 12.2086 | Immune cells | #DC143C |
| celltype | Basal cells | 1785 | 6.4114 | Epithelial cells | #006400 |
| celltype | Endothelial cells | 1445 | 5.1902 | Endothelial cells | #00FFFF |
| celltype | Macrophages | 649 | 2.3311 | Immune cells | #E9967A |
| celltype | Smooth muscle cells | 555 | 1.9935 | Muscle cells | #DEB887 |
| celltype | Plasma B cells | 281 | 1.0093 | Immune cells | #FFB6C1 |
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