ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys08tis01
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121_tis/sys08tis01/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
45,564
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 2,168 | 4.7581423931174% | — | — | — |
| T cells | 1,697 | 3.7244315687824% | — | — | — |
| Natural killer cells | 388 | 0.85154946887894% | — | — | — |
| Neutrophils | 174 | 0.38188043191994% | — | — | — |
| Erythroid cells | 123 | 0.26994996049513% | — | — | — |
| Granulocytes | 88 | 0.19313493108595% | — | — | — |
| B cells | 42 | 0.092178035291019% | — | — | — |
| Mast cells | 37 | 0.081204459661136% | — | — | — |
| Basophils | 11 | 0.024141866385743% | — | — | — |
| Natural killer T cells | 8 | 0.017557721007813% | — | — | — |
| Monocytes | 3 | 0.0065841453779299% | — | — | — |
| Plasma B cells | 1 | 0.0021947151259766% | — | — | — |
| Progenitor-like epithelial cells | 49 | 0.10754104117286% | — | — | — |
| Mesenchymal cells | 21,836 | 47.923799490826% | — | — | — |
| Pericytes | 2,421 | 5.3134053199895% | — | — | — |
| Tendon cells | 334 | 0.7330348520762% | — | — | — |
| Satellite cells | 7,715 | 16.93222719691% | — | — | — |
| Type II myonuclei | 398 | 0.87349662013871% | — | — | — |
| Smooth muscle cells | 336 | 0.73742428232815% | — | — | — |
| Type I myonuclei | 126 | 0.27653410587306% | — | — | — |
| Endothelial cells | 7,609 | 16.699587393556% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Mesenchymal cells | 21836 | 47.9238 | Stromal cells | #556B2F |
| celltype | Satellite cells | 7715 | 16.9322 | Muscle cells | #CD853F |
| celltype | Endothelial cells | 7609 | 16.6996 | Endothelial cells | #00FFFF |
| celltype | Pericytes | 2421 | 5.3134 | Stromal cells | #6B8E23 |
| celltype | Macrophages | 2168 | 4.7581 | Immune cells | #E9967A |
| celltype | T cells | 1697 | 3.7244 | Immune cells | #DC143C |
| celltype | Type II myonuclei | 398 | 0.8735 | Muscle cells | #BC8F8F |
| celltype | Natural killer cells | 388 | 0.8515 | Immune cells | #DB7093 |
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