ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys10tis01
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121_tis/sys10tis01/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
2,660
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
14
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Hematopoietic stem and progenitor cells | 780 | 29.323308270677% | — | — | — |
| Macrophages | 223 | 8.3834586466165% | — | — | — |
| Neutrophils | 9 | 0.33834586466165% | — | — | — |
| T cells | 9 | 0.33834586466165% | — | — | — |
| Monocytes | 2 | 0.075187969924812% | — | — | — |
| B cells | 1 | 0.037593984962406% | — | — | — |
| Mast cells | 1 | 0.037593984962406% | — | — | — |
| Supporting cells of vestibular epithelium | 216 | 8.1203007518797% | — | — | — |
| Melanocytes | 99 | 3.7218045112782% | — | — | — |
| Vestibular dark cells | 45 | 1.6917293233083% | — | — | — |
| Other stromal cells | 1,053 | 39.586466165414% | — | — | — |
| Pericytes | 1 | 0.037593984962406% | — | — | — |
| Smooth muscle cells | 71 | 2.6691729323308% | — | — | — |
| Endothelial cells | 150 | 5.6390977443609% | — | — | — |
14 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Other stromal cells | 1053 | 39.5865 | Stromal cells | #008B8B |
| celltype | Hematopoietic stem and progenitor cells | 780 | 29.3233 | Immune cells | #78909C |
| celltype | Macrophages | 223 | 8.3835 | Immune cells | #E9967A |
| celltype | Supporting cells of vestibular epithelium | 216 | 8.1203 | Epithelial cells | #FFB6C1 |
| celltype | Endothelial cells | 150 | 5.6391 | Endothelial cells | #00FFFF |
| celltype | Melanocytes | 99 | 3.7218 | Epithelial cells | #1E90FF |
| celltype | Smooth muscle cells | 71 | 2.6692 | Muscle cells | #DEB887 |
| celltype | Vestibular dark cells | 45 | 1.6917 | Epithelial cells | #4B0082 |
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