ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys10tis02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP121_tis/sys10tis02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
22,587
Cells represented in this release
🧬
Total Genes
19,739
Genes represented in the source matrix
🔷
Cell Types
10
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 4,120 | 18.240580865099% | — | — | — |
| Macrophages | 2,496 | 11.050604329924% | — | — | — |
| Mast cells | 1,629 | 7.2121131624386% | — | — | — |
| Dendritic cells | 827 | 3.661398149378% | — | — | — |
| Natural killer cells | 337 | 1.4920086775579% | — | — | — |
| Keratinocytes | 3,938 | 17.434807632709% | — | — | — |
| Melanocytes | 302 | 1.3370522867136% | — | — | — |
| Fibroblasts | 4,521 | 20.01593837163% | — | — | — |
| Pericytes | 1,106 | 4.8966219506796% | — | — | — |
| Endothelial cells | 3,311 | 14.65887457387% | — | — | — |
10 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Fibroblasts | 4521 | 20.0159 | Stromal cells | #008000 |
| celltype | T cells | 4120 | 18.2406 | Immune cells | #DC143C |
| celltype | Keratinocytes | 3938 | 17.4348 | Epithelial cells | #7FFFD4 |
| celltype | Endothelial cells | 3311 | 14.6589 | Endothelial cells | #00FFFF |
| celltype | Macrophages | 2496 | 11.0506 | Immune cells | #E9967A |
| celltype | Mast cells | 1629 | 7.2121 | Immune cells | #F08080 |
| celltype | Pericytes | 1106 | 4.8966 | Stromal cells | #6B8E23 |
| celltype | Dendritic cells | 827 | 3.6614 | Immune cells | #FF4500 |
First 8 rows