ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP124
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP124/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
550,139
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
106
Annotated cell-type groups
🫀
Tissues
49
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 12,180 | 2.2139859199221% | — | — | — |
| Microglia | 8,711 | 1.5834180089032% | — | — | — |
| Oligodendrocytes | 4,835 | 0.87886879497727% | — | — | — |
| Inhibitory neurons | 4,192 | 0.76198924271866% | — | — | — |
| Astrocytes | 4,078 | 0.74126720701495% | — | — | — |
| Rod cells | 3,149 | 0.57240079325407% | — | — | — |
| Ganglion cells | 1,873 | 0.340459411167% | — | — | — |
| Oligodendrocyte progenitor cells | 1,576 | 0.28647305499156% | — | — | — |
| Amacrine cells | 1,042 | 0.18940667722157% | — | — | — |
| Enteric neurons | 1,005 | 0.18268110423002% | — | — | — |
| Bipolar cells | 786 | 0.14287298300975% | — | — | — |
| Muller cells | 572 | 0.10397372300455% | — | — | — |
| Enteric glial cells | 271 | 0.049260277857051% | — | — | — |
| Cone cells | 247 | 0.044897744024692% | — | — | — |
| Schwann cells | 178 | 0.032355459256661% | — | — | — |
| Chromaffin cells | 23 | 0.0041807615893438% | — | — | — |
| T cells | 34,911 | 6.3458507758948% | — | — | — |
| Monocytes | 31,903 | 5.7990798689059% | — | — | — |
| B cells | 28,321 | 5.1479716944263% | — | — | — |
| Macrophages | 24,963 | 4.5375805023821% | — | — | — |
| Neutrophils | 12,725 | 2.3130517923652% | — | — | — |
| Plasma B cells | 6,988 | 1.2702244341885% | — | — | — |
| Thymocytes | 5,511 | 1.0017468312554% | — | — | — |
| Natural killer T cells | 5,406 | 0.9826607457388% | — | — | — |
| Dendritic cells | 4,311 | 0.78362013963744% | — | — | — |
| Goblet cells | 3,877 | 0.70473098616895% | — | — | — |
| Cycling T cells | 3,131 | 0.5691288928798% | — | — | — |
| Club cells | 2,502 | 0.4547941520234% | — | — | — |
| Kupffer cells | 2,425 | 0.44079768931125% | — | — | — |
| Natural killer cells | 2,146 | 0.39008323351008% | — | — | — |
| Pancreas islet cells | 1,816 | 0.33009839331514% | — | — | — |
| Erythroid cells | 1,606 | 0.29192622228201% | — | — | — |
| Cycling B cells | 1,552 | 0.2821105211592% | — | — | — |
| Common myeloid progenitors | 959 | 0.17431958105133% | — | — | — |
| Mast cells | 254 | 0.046170149725797% | — | — | — |
| Basophils | 74 | 0.013451145983106% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 62 | 0.011269879066927% | — | — | — |
| Hematopoietic stem and progenitor cells | 20 | 0.0036354448602989% | — | — | — |
| Enterocytes | 51,841 | 9.4232548501379% | — | — | — |
| Glandular cells | 27,685 | 5.0323645478688% | — | — | — |
| Hepatocytes | 19,749 | 3.5898200273022% | — | — | — |
| Proximal tubule cells | 17,257 | 3.1368435977089% | — | — | — |
| Mucous cells | 12,083 | 2.1963540123496% | — | — | — |
| Alveolar type 2 cells | 7,923 | 1.4401814814074% | — | — | — |
| Cycling epithelial cells | 6,519 | 1.1849732522144% | — | — | — |
| Chief cells | 5,166 | 0.93903540741522% | — | — | — |
| Urothelial cells | 2,875 | 0.52259519866797% | — | — | — |
| Parietal cells | 1,978 | 0.35954549668357% | — | — | — |
| Serous cells | 1,934 | 0.35154751799091% | — | — | — |
| Basal cells | 1,911 | 0.34736675640156% | — | — | — |
| Keratinocytes | 1,686 | 0.3064680017232% | — | — | — |
| Alveolar type 1 cells | 1,477 | 0.26847760293308% | — | — | — |
| Fasciculata cells | 1,465 | 0.2662963360169% | — | — | — |
| Distal convoluted tubule cells | 1,430 | 0.25993430751137% | — | — | — |
| Luminal epithelial cells | 1,390 | 0.25266341779078% | — | — | — |
| Cycling glandular cells | 901 | 0.16377679095647% | — | — | — |
| Pancreas ductal cells | 666 | 0.12106031384795% | — | — | — |
| Acinar cells | 460 | 0.083615231786876% | — | — | — |
| Taste cells | 416 | 0.075617253094218% | — | — | — |
| Descending limb of loop of Henle cells | 378 | 0.06870990785965% | — | — | — |
| Connecting tubule cells | 349 | 0.063438512812217% | — | — | — |
| Ciliated cells | 265 | 0.048169644398961% | — | — | — |
| Peritubular myoid cells | 247 | 0.044897744024692% | — | — | — |
| Cholangiocytes | 235 | 0.042716477108513% | — | — | — |
| Neuroendocrine cells | 229 | 0.041625843650423% | — | — | — |
| Cycling gastric epithelial cell | 187 | 0.033991409443795% | — | — | — |
| Surface epithelial cells | 162 | 0.029447103368421% | — | — | — |
| Principal like cells | 94 | 0.017086590843405% | — | — | — |
| Endocrine cells | 83 | 0.015087096170241% | — | — | — |
| Choroid plexus | 76 | 0.013814690469136% | — | — | — |
| Cycling basal cells | 75 | 0.013632918226121% | — | — | — |
| Enteroendocrine cells | 55 | 0.0099974733658221% | — | — | — |
| Sertoli cells | 52 | 0.0094521566367773% | — | — | — |
| Podocytes | 49 | 0.0089068399077324% | — | — | — |
| Squamous cells | 25 | 0.0045443060753737% | — | — | — |
| Ependymal cells | 21 | 0.0038172171033139% | — | — | — |
| Adipocytes | 24,706 | 4.4908650359273% | — | — | — |
| Fibroblasts | 12,644 | 2.298328240681% | — | — | — |
| Other stromal cells | 8,562 | 1.556333944694% | — | — | — |
| Theca cells | 6,205 | 1.1278967679077% | — | — | — |
| Mesenchymal cells | 3,785 | 0.68800793981157% | — | — | — |
| Homeostatic chondrocytes | 2,867 | 0.52114102072385% | — | — | — |
| Pericytes | 2,460 | 0.44715971781677% | — | — | — |
| Adipocyte progenitor cells | 1,633 | 0.29683407284341% | — | — | — |
| Epineurial cells | 1,355 | 0.24630138928525% | — | — | — |
| Stellate cells | 1,050 | 0.19086085516569% | — | — | — |
| Perineurial cells | 681 | 0.12378689749318% | — | — | — |
| Tendon cells | 660 | 0.11996968038987% | — | — | — |
| Leydig cells | 549 | 0.099792961415206% | — | — | — |
| Mesothelial cells | 518 | 0.094158021881743% | — | — | — |
| Endoneurial cells | 323 | 0.058712434493828% | — | — | — |
| Granulosa cells | 216 | 0.039262804491229% | — | — | — |
| Type II myonuclei | 10,235 | 1.860438907258% | — | — | — |
| Smooth muscle cells | 7,150 | 1.2996715375569% | — | — | — |
| Cardiomyocytes | 5,577 | 1.0137437992944% | — | — | — |
| Satellite cells | 1,429 | 0.25975253526836% | — | — | — |
| Type I myonuclei | 201 | 0.036536220846004% | — | — | — |
| Neuromuscular junctions | 68 | 0.012360512525016% | — | — | — |
| Spermatocytes | 13,945 | 2.5348139288434% | — | — | — |
| Spermatids | 3,381 | 0.61457195363354% | — | — | — |
| Spermatozoa | 927 | 0.16850286927486% | — | — | — |
| Spermatogonia | 393 | 0.071436491504874% | — | — | — |
| Endothelial cells | 44,956 | 8.17175295698% | — | — | — |
| Ascending loop of Henle cells | 2,202 | 0.40026247911891% | — | — | — |
| Principal cells | 1,086 | 0.19740465591423% | — | — | — |
| Intercalated cells | 800 | 0.14541779441196% | — | — | — |
106 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 51841 | 9.4233 | Epithelial cells | #E91E63 |
| celltype | Endothelial cells | 44956 | 8.1718 | Endothelial cells | #F44336 |
| celltype | T cells | 34911 | 6.3459 | Immune cells | #EF5350 |
| celltype | Monocytes | 31903 | 5.7991 | Immune cells | #FF8A65 |
| celltype | B cells | 28321 | 5.148 | Immune cells | #2E7D32 |
| celltype | Glandular cells | 27685 | 5.0324 | Epithelial cells | #008080 |
| celltype | Macrophages | 24963 | 4.5376 | Immune cells | #8D6E63 |
| celltype | Adipocytes | 24706 | 4.4909 | Stromal cells | #42A5F5 |
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