ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP124_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
96,050
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
19
Annotated cell-type groups
🫀
Tissues
7
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Monocytes | 30,418 | 31.668922436231% | — | — | — |
| T cells | 17,814 | 18.546590317543% | — | — | — |
| B cells | 15,748 | 16.39562727746% | — | — | — |
| Neutrophils | 12,243 | 12.746486205102% | — | — | — |
| Thymocytes | 5,511 | 5.7376366475794% | — | — | — |
| Cycling T cells | 3,056 | 3.1816762103071% | — | — | — |
| Natural killer cells | 1,909 | 1.9875065070276% | — | — | — |
| Plasma B cells | 1,896 | 1.9739718896408% | — | — | — |
| Dendritic cells | 1,474 | 1.5346173867777% | — | — | — |
| Erythroid cells | 1,312 | 1.3659552316502% | — | — | — |
| Common myeloid progenitors | 959 | 0.99843831337845% | — | — | — |
| Macrophages | 770 | 0.80166579906299% | — | — | — |
| Mast cells | 225 | 0.23425299323269% | — | — | — |
| Basophils | 74 | 0.077043206663196% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 62 | 0.064549713690786% | — | — | — |
| Cycling B cells | 39 | 0.040603852160333% | — | — | — |
| Hematopoietic stem and progenitor cells | 20 | 0.02082248828735% | — | — | — |
| Fibroblasts | 30 | 0.031233732431026% | — | — | — |
| Endothelial cells | 2,490 | 2.5923997917751% | — | — | — |
19 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Monocytes | 30418 | 31.6689 | Immune cells | #FF8A65 |
| celltype | T cells | 17814 | 18.5466 | Immune cells | #EF5350 |
| celltype | B cells | 15748 | 16.3956 | Immune cells | #2E7D32 |
| celltype | Neutrophils | 12243 | 12.7465 | Immune cells | #FFEE58 |
| celltype | Thymocytes | 5511 | 5.7376 | Immune cells | #00ACC1 |
| celltype | Cycling T cells | 3056 | 3.1817 | Immune cells | #9CCC65 |
| celltype | Endothelial cells | 2490 | 2.5924 | Endothelial cells | #F44336 |
| celltype | Natural killer cells | 1909 | 1.9875 | Immune cells | #DB7093 |
First 8 rows