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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics System › sys04

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP124 System: sys04 Generated: 2026-08-08 07:47
๐Ÿ“ analysis_results_v2/SP124_sys/sys04/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
🔬
29,610
Total Cells
🧬
17,509
Total Genes
🔷
14
Cell Types
🫀
3
Tissues
📦
N/A
Samples
N/A: Not exported by the post-QC descriptive statistics pipeline.
📊
N/A
Clusters
N/A: Not exported by the post-QC descriptive statistics pipeline.
⚡
N/A
Mito %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🧪
N/A
Ribo %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🚫
N/A
Cells Filtered
N/A: Validated Raw Count Thresholds Not Available.
✅
N/A
Pass Rate
N/A: Validated Raw Count Thresholds Not Available.
๐Ÿ“‹ Overview ๐Ÿ“Š QC Metrics ๐Ÿ—บ๏ธ UMAP ๐Ÿงฉ Composition ๐Ÿงฌ Markers ๐Ÿ“ˆ Gene Stats ๐Ÿ“ Data 2
📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬
Total Cells
29,610
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
14
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

๐Ÿ”ท Cell Type / Cluster Breakdown

NameCells%Med GenesMed CountsMed Mito%
Macrophages6,53922.083755488011%———
T cells2,7819.3920972644377%———
Club cells2,5028.4498480243161%———
Dendritic cells2050.69233367105708%———
Alveolar type 2 cells7,92326.757852077001%———
Alveolar type 1 cells1,4774.9881796690307%———
Ciliated cells2650.89496791624451%———
Basal cells830.28031070584262%———
Fibroblasts2,0636.967240797028%———
Mesothelial cells3241.0942249240122%———
Satellite cells1200.40526849037487%———
Smooth muscle cells950.32083755488011%———
Neuromuscular junctions680.22965214454576%———
Endothelial cells5,16517.443431273219%———
14 groups
๐Ÿ“Š

QC MetricsInteractive boxplots and scatter plots

๐Ÿ“ Distribution Summary

MetricMinQ1MedianMeanQ3MaxStd

๐ŸŽป Genes/Cell BOXPLOT

๐ŸŽป Counts/Cell BOXPLOT

๐ŸŽป Mito % BOXPLOT

๐ŸŽป Ribo % BOXPLOT

๐Ÿ”ฌ Genes vs Counts SCATTER

๐Ÿ—บ๏ธ

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

๐Ÿ—บ๏ธ UMAP by Group INTERACTIVE

๐Ÿงฉ

Cell CompositionCell type proportions overall and per sample

๐Ÿฅง Overall PIE

๐Ÿ“Š Per-sample STACKED BAR

๐Ÿงฌ

Marker GenesTop markers per cluster and expression heatmap

๐Ÿ”ฅ Expression Heatmap Z-SCORE

๐Ÿ“ˆ

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

๐Ÿ† Top Expressed BAR

๐Ÿ“

Data FilesDownload QC data tables

๐Ÿ“‹ Available Files

FileDescriptionAction
composition.csvComposition๐Ÿ“ฅ Download
gene_stats.csvGene Stats๐Ÿ“ฅ Download

๐Ÿ“‹ Preview: composition.csv

๐Ÿ“ฅ Full CSV
groupinggroupcountpctcategorycolor
celltypeAlveolar type 2 cells792326.7579Epithelial cells#AB47BC
celltypeMacrophages653922.0838Immune cells#8D6E63
celltypeEndothelial cells516517.4434Endothelial cells#F44336
celltypeT cells27819.3921Immune cells#EF5350
celltypeClub cells25028.4498Immune cells#D4E157
celltypeFibroblasts20636.9672Stromal cells#26A69A
celltypeAlveolar type 1 cells14774.9882Epithelial cells#FFA726
celltypeMesothelial cells3241.0942Stromal cells#EF5350
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