ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP124_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
186,122
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
40
Annotated cell-type groups
🫀
Tissues
13
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric neurons | 1,005 | 0.53996840781853% | — | — | — |
| Enteric glial cells | 271 | 0.14560342141176% | — | — | — |
| T cells | 10,266 | 5.5157369897164% | — | — | — |
| B cells | 5,216 | 2.802462900678% | — | — | — |
| Plasma B cells | 5,062 | 2.7197214730123% | — | — | — |
| Macrophages | 5,042 | 2.7089758330557% | — | — | — |
| Goblet cells | 3,877 | 2.0830423055845% | — | — | — |
| Kupffer cells | 2,425 | 1.3029088447362% | — | — | — |
| Pancreas islet cells | 1,816 | 0.97570410805816% | — | — | — |
| Dendritic cells | 1,681 | 0.90317103835119% | — | — | — |
| Cycling B cells | 1,513 | 0.81290766271585% | — | — | — |
| Monocytes | 896 | 0.48140467005513% | — | — | — |
| Cycling T cells | 75 | 0.040296149837204% | — | — | — |
| Enterocytes | 51,841 | 27.853236049473% | — | — | — |
| Glandular cells | 27,420 | 14.732272380482% | — | — | — |
| Hepatocytes | 19,749 | 10.610782175132% | — | — | — |
| Mucous cells | 12,083 | 6.4919783797724% | — | — | — |
| Cycling epithelial cells | 6,519 | 3.5025413438497% | — | — | — |
| Chief cells | 5,166 | 2.7755988007866% | — | — | — |
| Parietal cells | 1,978 | 1.0627437917065% | — | — | — |
| Serous cells | 1,934 | 1.039103383802% | — | — | — |
| Cycling glandular cells | 901 | 0.48409108004427% | — | — | — |
| Pancreas ductal cells | 666 | 0.35782981055437% | — | — | — |
| Acinar cells | 460 | 0.24714971900152% | — | — | — |
| Taste cells | 416 | 0.22350931109702% | — | — | — |
| Basal cells | 260 | 0.13969331943564% | — | — | — |
| Cholangiocytes | 235 | 0.1262612694899% | — | — | — |
| Neuroendocrine cells | 229 | 0.12303757750293% | — | — | — |
| Cycling gastric epithelial cell | 187 | 0.10047173359409% | — | — | — |
| Endocrine cells | 83 | 0.044594405819839% | — | — | — |
| Cycling basal cells | 75 | 0.040296149837204% | — | — | — |
| Enteroendocrine cells | 55 | 0.029550509880616% | — | — | — |
| Squamous cells | 25 | 0.013432049945735% | — | — | — |
| Other stromal cells | 3,262 | 1.7526138769194% | — | — | — |
| Fibroblasts | 1,468 | 0.78872997281353% | — | — | — |
| Stellate cells | 1,050 | 0.56414609772085% | — | — | — |
| Pericytes | 303 | 0.1627964453423% | — | — | — |
| Adipocytes | 59 | 0.031699637871933% | — | — | — |
| Smooth muscle cells | 3,035 | 1.6306508634122% | — | — | — |
| Endothelial cells | 7,518 | 4.0392860596813% | — | — | — |
40 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 51841 | 27.8532 | Epithelial cells | #E91E63 |
| celltype | Glandular cells | 27420 | 14.7323 | Epithelial cells | #008080 |
| celltype | Hepatocytes | 19749 | 10.6108 | Epithelial cells | #78909C |
| celltype | Mucous cells | 12083 | 6.492 | Epithelial cells | #9CCC65 |
| celltype | T cells | 10266 | 5.5157 | Immune cells | #EF5350 |
| celltype | Endothelial cells | 7518 | 4.0393 | Endothelial cells | #F44336 |
| celltype | Cycling epithelial cells | 6519 | 3.5025 | Epithelial cells | #87CEFA |
| celltype | B cells | 5216 | 2.8025 | Immune cells | #2E7D32 |
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