ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP124_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
33,391
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 907 | 2.7163007996167% | — | — | — |
| T cells | 344 | 1.0302177233386% | — | — | — |
| Monocytes | 50 | 0.14974094815968% | — | — | — |
| Proximal tubule cells | 17,257 | 51.681590847833% | — | — | — |
| Urothelial cells | 2,875 | 8.6101045191818% | — | — | — |
| Distal convoluted tubule cells | 1,430 | 4.282591117367% | — | — | — |
| Descending limb of loop of Henle cells | 378 | 1.1320415680872% | — | — | — |
| Connecting tubule cells | 349 | 1.0451918181546% | — | — | — |
| Principal like cells | 94 | 0.28151298254021% | — | — | — |
| Podocytes | 49 | 0.14674612919649% | — | — | — |
| Other stromal cells | 2,608 | 7.8104878560091% | — | — | — |
| Fibroblasts | 910 | 2.7252852565062% | — | — | — |
| Mesothelial cells | 11 | 0.03294300859513% | — | — | — |
| Smooth muscle cells | 261 | 0.78164774939355% | — | — | — |
| Endothelial cells | 1,780 | 5.3307777544847% | — | — | — |
| Ascending loop of Henle cells | 2,202 | 6.5945913569525% | — | — | — |
| Principal cells | 1,086 | 3.2523733940283% | — | — | — |
| Intercalated cells | 800 | 2.3958551705549% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Proximal tubule cells | 17257 | 51.6816 | Epithelial cells | #78909C |
| celltype | Urothelial cells | 2875 | 8.6101 | Epithelial cells | #FF8A65 |
| celltype | Other stromal cells | 2608 | 7.8105 | Stromal cells | #008B8B |
| celltype | Ascending loop of Henle cells | 2202 | 6.5946 | Other | #26A69A |
| celltype | Endothelial cells | 1780 | 5.3308 | Endothelial cells | #F44336 |
| celltype | Distal convoluted tubule cells | 1430 | 4.2826 | Epithelial cells | #FFEE58 |
| celltype | Principal cells | 1086 | 3.2524 | Other | #2E7D32 |
| celltype | Fibroblasts | 910 | 2.7253 | Stromal cells | #26A69A |
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