ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP124_tis/sys05tis07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
23,118
Cells represented in this release
🧬
Total Genes
17,509
Genes represented in the source matrix
🔷
Cell Types
17
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric neurons | 274 | 1.1852236352626% | — | — | — |
| Enteric glial cells | 139 | 0.60126308504196% | — | — | — |
| Goblet cells | 1,121 | 4.8490353836837% | — | — | — |
| B cells | 739 | 3.1966433082447% | — | — | — |
| T cells | 517 | 2.2363526256597% | — | — | — |
| Macrophages | 500 | 2.1628168526689% | — | — | — |
| Plasma B cells | 334 | 1.4447616575828% | — | — | — |
| Monocytes | 188 | 0.81321913660351% | — | — | — |
| Enterocytes | 15,992 | 69.175534215763% | — | — | — |
| Cycling epithelial cells | 268 | 1.1592698330305% | — | — | — |
| Neuroendocrine cells | 229 | 0.99057011852236% | — | — | — |
| Enteroendocrine cells | 55 | 0.23790985379358% | — | — | — |
| Fibroblasts | 1,468 | 6.3500302794359% | — | — | — |
| Pericytes | 142 | 0.61423998615797% | — | — | — |
| Adipocytes | 59 | 0.25521238861493% | — | — | — |
| Smooth muscle cells | 585 | 2.5304957176226% | — | — | — |
| Endothelial cells | 508 | 2.1974219223116% | — | — | — |
17 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 15992 | 69.1755 | Epithelial cells | #E91E63 |
| celltype | Fibroblasts | 1468 | 6.35 | Stromal cells | #26A69A |
| celltype | Goblet cells | 1121 | 4.849 | Immune cells | #66BB6A |
| celltype | B cells | 739 | 3.1966 | Immune cells | #2E7D32 |
| celltype | Smooth muscle cells | 585 | 2.5305 | Muscle cells | #FFCA28 |
| celltype | T cells | 517 | 2.2364 | Immune cells | #EF5350 |
| celltype | Endothelial cells | 508 | 2.1974 | Endothelial cells | #F44336 |
| celltype | Macrophages | 500 | 2.1628 | Immune cells | #8D6E63 |
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