ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP126
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP126/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
321,554
Cells represented in this release
🧬
Total Genes
16,460
Genes represented in the source matrix
🔷
Cell Types
54
Annotated cell-type groups
🫀
Tissues
15
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 5,025 | 1.5627235238871% | — | — | — |
| Amacrine cells | 1,631 | 0.50722429203182% | — | — | — |
| Microglia | 1,447 | 0.45000217692829% | — | — | — |
| Ganglion cells | 1,300 | 0.40428668279667% | — | — | — |
| Excitatory neurons | 1,045 | 0.32498429501732% | — | — | — |
| Oligodendrocyte progenitor cells | 579 | 0.18006306872252% | — | — | — |
| Astrocytes | 516 | 0.16047071409468% | — | — | — |
| Rod cells | 490 | 0.15238498043874% | — | — | — |
| Muller cells | 325 | 0.10107167069917% | — | — | — |
| Bipolar cells | 149 | 0.046337473643618% | — | — | — |
| Cone cells | 44 | 0.013683549263887% | — | — | — |
| Macrophages | 39,873 | 12.400094540886% | — | — | — |
| T cells | 13,140 | 4.0864053938063% | — | — | — |
| B cells | 8,949 | 2.7830473264211% | — | — | — |
| Monocytes | 7,350 | 2.2857747065812% | — | — | — |
| Neutrophils | 3,707 | 1.1528390254825% | — | — | — |
| Natural killer cells | 2,881 | 0.89596148702862% | — | — | — |
| Kupffer cells | 1,550 | 0.48203412179603% | — | — | — |
| Dendritic cells | 1,109 | 0.34488763940116% | — | — | — |
| Cycling B cells | 966 | 0.30041610429352% | — | — | — |
| Erythroid cells | 788 | 0.24505992772598% | — | — | — |
| Plasma B cells | 428 | 0.1331036155669% | — | — | — |
| Club cells | 374 | 0.11631016874304% | — | — | — |
| Cycling T cells | 303 | 0.094229896067224% | — | — | — |
| Mast cells | 234 | 0.0727716029034% | — | — | — |
| Platelets | 52 | 0.016171467311867% | — | — | — |
| Natural killer T cells | 46 | 0.014305528775882% | — | — | — |
| Keratinocytes | 5,487 | 1.7064007911579% | — | — | — |
| Proximal tubule cells | 1,775 | 0.55200681689545% | — | — | — |
| Alveolar type 2 cells | 1,570 | 0.48825391691598% | — | — | — |
| Alveolar type 1 cells | 1,264 | 0.39309105158076% | — | — | — |
| Hepatocytes | 338 | 0.10511453752713% | — | — | — |
| Distal convoluted tubule cells | 239 | 0.074326551683388% | — | — | — |
| Ciliated cells | 138 | 0.042916586327646% | — | — | — |
| Cholangiocytes | 57 | 0.017726416091854% | — | — | — |
| Sertoli cells | 34 | 0.010573651703913% | — | — | — |
| Adipocytes | 12,139 | 3.7751046480529% | — | — | — |
| Fibroblasts | 6,673 | 2.0752346417709% | — | — | — |
| Adipocyte progenitor cells | 4,745 | 1.4756463922078% | — | — | — |
| Pericytes | 149 | 0.046337473643618% | — | — | — |
| Mesothelial cells | 99 | 0.030787985843746% | — | — | — |
| Cardiomyocytes | 82,501 | 25.656965859545% | — | — | — |
| Smooth muscle cells | 16,109 | 5.0097339793627% | — | — | — |
| Skeletal myonuclei | 7,088 | 2.2042953905098% | — | — | — |
| Satellite cells | 276 | 0.085833172655293% | — | — | — |
| Type I myonuclei | 256 | 0.079613377535344% | — | — | — |
| Neuromuscular junctions | 41 | 0.012750579995895% | — | — | — |
| Spermatogonia | 1,274 | 0.39620094914074% | — | — | — |
| Spermatids | 343 | 0.10666948630712% | — | — | — |
| Spermatocytes | 129 | 0.040117678523669% | — | — | — |
| Endothelial cells | 81,537 | 25.357171734763% | — | — | — |
| Ascending loop of Henle cells | 2,134 | 0.66365213929853% | — | — | — |
| Intercalated cells | 662 | 0.2058752184703% | — | — | — |
| Principal cells | 196 | 0.060953992175498% | — | — | — |
54 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Cardiomyocytes | 82501 | 25.657 | Muscle cells | #2E7D32 |
| celltype | Endothelial cells | 81537 | 25.3572 | Endothelial cells | #8D6E63 |
| celltype | Macrophages | 39873 | 12.4001 | Immune cells | #FFEE58 |
| celltype | Smooth muscle cells | 16109 | 5.0097 | Muscle cells | #FFCA28 |
| celltype | T cells | 13140 | 4.0864 | Immune cells | #D4E157 |
| celltype | Adipocytes | 12139 | 3.7751 | Stromal cells | #E91E63 |
| celltype | B cells | 8949 | 2.783 | Immune cells | #66BB6A |
| celltype | Monocytes | 7350 | 2.2858 | Immune cells | #E91E63 |
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