ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP1568
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP1568/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
65,039
Cells represented in this release
🧬
Total Genes
13,456
Genes represented in the source matrix
🔷
Cell Types
34
Annotated cell-type groups
🫀
Tissues
7
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Inhibitory neurons | 6,375 | 9.8018112209597% | — | — | — |
| Astrocytes | 2,602 | 4.0006765171666% | — | — | — |
| Excitatory neurons | 2,341 | 3.5993788342379% | — | — | — |
| Oligodendrocytes | 511 | 0.78568243669183% | — | — | — |
| Oligodendrocyte progenitor cells | 178 | 0.27368194467935% | — | — | — |
| Microglia | 162 | 0.24908132043851% | — | — | — |
| Purkinje cells | 78 | 0.1199280431741% | — | — | — |
| Enteric neurons | 48 | 0.07380187272252% | — | — | — |
| Macrophages | 5,323 | 8.1843201771245% | — | — | — |
| T cells | 2,636 | 4.0529528436784% | — | — | — |
| B cells | 2,171 | 3.337997201679% | — | — | — |
| Kupffer cells | 1,427 | 2.1940681744799% | — | — | — |
| Cycling T cells | 609 | 0.93636126016698% | — | — | — |
| Club cells | 560 | 0.8610218484294% | — | — | — |
| Dendritic cells | 297 | 0.45664908747059% | — | — | — |
| Hepatocytes | 11,598 | 17.832377496579% | — | — | — |
| Proximal tubule cells | 2,337 | 3.5932286781777% | — | — | — |
| Alveolar type 2 cells | 1,520 | 2.3370593028798% | — | — | — |
| Distal convoluted tubule cells | 704 | 1.082427466597% | — | — | — |
| Alveolar type 1 cells | 413 | 0.63500361321669% | — | — | — |
| Cycling gastric epithelial cell | 325 | 0.49970017989206% | — | — | — |
| Mucous cells | 313 | 0.48124971171143% | — | — | — |
| Ciliated cells | 293 | 0.45049893141038% | — | — | — |
| Parietal cells | 130 | 0.19988007195683% | — | — | — |
| Fibroblasts | 1,560 | 2.3985608634819% | — | — | — |
| Stellate cells | 469 | 0.72110579805963% | — | — | — |
| Mesothelial cells | 463 | 0.71188056396931% | — | — | — |
| Adipocytes | 100 | 0.15375390150525% | — | — | — |
| Cardiomyocytes | 7,358 | 11.313212072756% | — | — | — |
| Smooth muscle cells | 47 | 0.072264333707468% | — | — | — |
| Endothelial cells | 8,549 | 13.144421039684% | — | — | — |
| Ascending loop of Henle cells | 1,666 | 2.5615399990775% | — | — | — |
| Principal cells | 1,023 | 1.5729024123987% | — | — | — |
| Intercalated cells | 853 | 1.3115207798398% | — | — | — |
34 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Hepatocytes | 11598 | 17.8324 | Epithelial cells | #7E57C2 |
| celltype | Endothelial cells | 8549 | 13.1444 | Endothelial cells | #29B6F6 |
| celltype | Cardiomyocytes | 7358 | 11.3132 | Muscle cells | #66BB6A |
| celltype | Inhibitory neurons | 6375 | 9.8018 | Neural cells | #EF5350 |
| celltype | Macrophages | 5323 | 8.1843 | Immune cells | #9CCC65 |
| celltype | T cells | 2636 | 4.053 | Immune cells | #2E7D32 |
| celltype | Astrocytes | 2602 | 4.0007 | Neural cells | #AB47BC |
| celltype | Excitatory neurons | 2341 | 3.5994 | Neural cells | #8D6E63 |
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