ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP1804
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP1804/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
24,392
Cells represented in this release
🧬
Total Genes
9,758
Genes represented in the source matrix
🔷
Cell Types
8
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 9,113 | 37.360610036077% | — | — | — |
| Inhibitory neurons | 7,370 | 30.214824532634% | — | — | — |
| Astrocytes | 4,448 | 18.235487044933% | — | — | — |
| Oligodendrocytes | 1,332 | 5.4608068219088% | — | — | — |
| Microglia | 416 | 1.7054772056412% | — | — | — |
| Oligodendrocyte progenitor cells | 239 | 0.97982945227944% | — | — | — |
| Ependymal cells | 1,151 | 4.7187602492621% | — | — | — |
| Fibroblasts | 323 | 1.3242046572647% | — | — | — |
8 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Excitatory neurons | 9113 | 37.3606 | Neural cells | #E91E63 |
| celltype | Inhibitory neurons | 7370 | 30.2148 | Neural cells | #FFA726 |
| celltype | Astrocytes | 4448 | 18.2355 | Neural cells | #4CAF50 |
| celltype | Oligodendrocytes | 1332 | 5.4608 | Neural cells | #66BB6A |
| celltype | Ependymal cells | 1151 | 4.7188 | Epithelial cells | #7B68EE |
| celltype | Microglia | 416 | 1.7055 | Neural cells | #AB47BC |
| celltype | Fibroblasts | 323 | 1.3242 | Stromal cells | #42A5F5 |
| celltype | Oligodendrocyte progenitor cells | 239 | 0.9798 | Neural cells | #26A69A |
First 8 rows