ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP202
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
709,436
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
106
Annotated cell-type groups
🫀
Tissues
41
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 65,900 | 9.2890690633123% | — | — | — |
| Inhibitory neurons | 64,480 | 9.088910063769% | — | — | — |
| Excitatory neurons | 62,341 | 8.7874029510766% | — | — | — |
| Microglia | 18,584 | 2.6195456672624% | — | — | — |
| Granule cells | 11,086 | 1.5626497668571% | — | — | — |
| Oligodendrocyte progenitor cells | 9,474 | 1.3354270152628% | — | — | — |
| Astrocytes | 6,053 | 0.8532129748138% | — | — | — |
| Rod cells | 1,937 | 0.27303379022209% | — | — | — |
| Chromaffin cells | 1,294 | 0.18239841225988% | — | — | — |
| Purkinje cells | 1,273 | 0.17943831437931% | — | — | — |
| Amacrine cells | 1,006 | 0.14180278418349% | — | — | — |
| Bipolar cells | 981 | 0.13827885813519% | — | — | — |
| Melanocytes | 658 | 0.092749733591191% | — | — | — |
| Muller cells | 354 | 0.049898792843893% | — | — | — |
| Cone cells | 246 | 0.034675432315248% | — | — | — |
| Schwann cells | 204 | 0.028755236554108% | — | — | — |
| Enteric glial cells | 158 | 0.02227121262524% | — | — | — |
| Motor neurons | 21 | 0.0029600978805699% | — | — | — |
| Enteric neurons | 20 | 0.002819140838638% | — | — | — |
| T cells | 42,762 | 6.0276050270919% | — | — | — |
| B cells | 38,706 | 5.4558832650162% | — | — | — |
| Monocytes | 26,607 | 3.7504440146821% | — | — | — |
| Macrophages | 20,906 | 2.9468479186283% | — | — | — |
| Dendritic cells | 10,515 | 1.4821632959139% | — | — | — |
| Neutrophils | 9,694 | 1.3664375644878% | — | — | — |
| Plasma B cells | 8,137 | 1.1469674501999% | — | — | — |
| Natural killer T cells | 6,950 | 0.97965144142671% | — | — | — |
| Club cells | 3,372 | 0.47530714539437% | — | — | — |
| Kupffer cells | 2,785 | 0.39256536178034% | — | — | — |
| Mast cells | 1,731 | 0.24399663958412% | — | — | — |
| Cycling B cells | 1,448 | 0.20410579671739% | — | — | — |
| Erythroid cells | 1,175 | 0.16562452426998% | — | — | — |
| Cycling T cells | 842 | 0.11868582930666% | — | — | — |
| Natural killer cells | 674 | 0.095005046262101% | — | — | — |
| Goblet cells | 450 | 0.063430668869355% | — | — | — |
| Pancreas islet cells | 418 | 0.058920043527535% | — | — | — |
| Platelets | 396 | 0.055818988605033% | — | — | — |
| Hematopoietic stem and progenitor cells | 239 | 0.033688733021724% | — | — | — |
| Common lymphoid progenitors | 126 | 0.01776058728342% | — | — | — |
| Common myeloid progenitors | 56 | 0.0078935943481864% | — | — | — |
| Basophils | 17 | 0.0023962697128423% | — | — | — |
| Follicular cells | 14,429 | 2.0338691580354% | — | — | — |
| Hepatocytes | 10,228 | 1.4417086248795% | — | — | — |
| Pancreas ductal cells | 10,160 | 1.4321235460281% | — | — | — |
| Acinar cells | 8,823 | 1.2436639809652% | — | — | — |
| Urothelial cells | 8,669 | 1.2219565965076% | — | — | — |
| Proximal tubule cells | 6,309 | 0.88929797754836% | — | — | — |
| Basal cells | 6,300 | 0.88802936417098% | — | — | — |
| Keratinocytes | 4,960 | 0.69914692798223% | — | — | — |
| Alveolar type 2 cells | 4,851 | 0.68378261041165% | — | — | — |
| Corticotropes | 4,157 | 0.58595842331091% | — | — | — |
| Fasciculata cells | 4,082 | 0.57538664516602% | — | — | — |
| Serous cells | 3,993 | 0.56284146843408% | — | — | — |
| Cycling epithelial cells | 3,790 | 0.5342271889219% | — | — | — |
| Enterocytes | 3,564 | 0.50237089744529% | — | — | — |
| Mucous cells | 2,610 | 0.36789787944226% | — | — | — |
| Glandular cells | 2,037 | 0.28712949441528% | — | — | — |
| Retinal pigmentary epithelial cells | 1,813 | 0.25555511702254% | — | — | — |
| Sertoli cells | 1,652 | 0.2328610332715% | — | — | — |
| Gonadotropes | 1,434 | 0.20213239813035% | — | — | — |
| Peritubular myoid cells | 1,351 | 0.19043296365% | — | — | — |
| Cycling intermediate cells | 1,052 | 0.14828680811236% | — | — | — |
| Somatotropes | 1,040 | 0.14659532360918% | — | — | — |
| Squamous cells | 988 | 0.13926555742872% | — | — | — |
| Connecting tubule cells | 882 | 0.12432411098394% | — | — | — |
| Melanotropes | 846 | 0.11924965747439% | — | — | — |
| Lactotropes | 767 | 0.10811405116177% | — | — | — |
| Distal convoluted tubule cells | 621 | 0.08753432303971% | — | — | — |
| Thyrotropes | 612 | 0.086265709662323% | — | — | — |
| Alveolar type 1 cells | 499 | 0.070337563924019% | — | — | — |
| Podocytes | 350 | 0.049334964676165% | — | — | — |
| Cycling glandular cells | 314 | 0.044260511166617% | — | — | — |
| Ciliated cells | 294 | 0.041441370327979% | — | — | — |
| Cholangiocytes | 224 | 0.031574377392746% | — | — | — |
| Cycling gastric epithelial cell | 217 | 0.030587678099222% | — | — | — |
| Endocrine cells | 190 | 0.026781837967061% | — | — | — |
| Descending limb of loop of Henle cells | 146 | 0.020579728122058% | — | — | — |
| Ependymal cells | 128 | 0.018042501367283% | — | — | — |
| Neuroendocrine cells | 102 | 0.014377618277054% | — | — | — |
| Surface epithelial cells | 43 | 0.0060611528030717% | — | — | — |
| Fibroblasts | 21,601 | 3.044813062771% | — | — | — |
| Other stromal cells | 13,583 | 1.914619500561% | — | — | — |
| Adipocytes | 7,718 | 1.0879064496304% | — | — | — |
| Homeostatic chondrocytes | 6,335 | 0.89296286063859% | — | — | — |
| Pericytes | 2,752 | 0.38791377939659% | — | — | — |
| Leydig cells | 2,498 | 0.35211069074589% | — | — | — |
| Epineurial cells | 2,022 | 0.2850151387863% | — | — | — |
| Mesenchymal cells | 1,767 | 0.24907109309367% | — | — | — |
| Endoneurial cells | 1,184 | 0.16689313764737% | — | — | — |
| Folliculostellate cells | 1,172 | 0.16520165314419% | — | — | — |
| Stellate cells | 941 | 0.13264057645792% | — | — | — |
| Adipocyte progenitor cells | 709 | 0.099938542729718% | — | — | — |
| Perineurial cells | 322 | 0.045388167502072% | — | — | — |
| Type II myonuclei | 27,279 | 3.8451671468603% | — | — | — |
| Smooth muscle cells | 17,896 | 2.5225672224133% | — | — | — |
| Cardiomyocytes | 4,054 | 0.57143984799193% | — | — | — |
| Type I myonuclei | 2,487 | 0.35056016328464% | — | — | — |
| Satellite cells | 1,179 | 0.16618835243771% | — | — | — |
| Neuromuscular junctions | 71 | 0.010007949977165% | — | — | — |
| Spermatocytes | 7,502 | 1.0574597285731% | — | — | — |
| Spermatogonia | 6,478 | 0.91311971763485% | — | — | — |
| Spermatids | 1,385 | 0.19522550307568% | — | — | — |
| Endothelial cells | 36,998 | 5.2151286373965% | — | — | — |
| Intercalated cells | 1,491 | 0.21016694952046% | — | — | — |
| Ascending loop of Henle cells | 1,123 | 0.15829475808952% | — | — | — |
| Principal cells | 286 | 0.040313713992524% | — | — | — |
106 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Oligodendrocytes | 65900 | 9.2891 | Neural cells | #BA68C8 |
| celltype | Inhibitory neurons | 64480 | 9.0889 | Neural cells | #2E7D32 |
| celltype | Excitatory neurons | 62341 | 8.7874 | Neural cells | #42A5F5 |
| celltype | T cells | 42762 | 6.0276 | Immune cells | #8D6E63 |
| celltype | B cells | 38706 | 5.4559 | Immune cells | #2E7D32 |
| celltype | Endothelial cells | 36998 | 5.2151 | Endothelial cells | #26C6DA |
| celltype | Type II myonuclei | 27279 | 3.8452 | Muscle cells | #BC8F8F |
| celltype | Monocytes | 26607 | 3.7504 | Immune cells | #7E57C2 |
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