ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
80,768
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
19
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| B cells | 22,773 | 28.195572503962% | — | — | — |
| Monocytes | 22,473 | 27.824138272583% | — | — | — |
| T cells | 12,837 | 15.893670760697% | — | — | — |
| Neutrophils | 9,694 | 12.002278129952% | — | — | — |
| Macrophages | 3,249 | 4.022632725832% | — | — | — |
| Plasma B cells | 2,859 | 3.5397682250396% | — | — | — |
| Dendritic cells | 1,993 | 2.4675614104596% | — | — | — |
| Cycling B cells | 1,275 | 1.5785954833597% | — | — | — |
| Erythroid cells | 1,175 | 1.4547840729002% | — | — | — |
| Platelets | 396 | 0.49029318541997% | — | — | — |
| Natural killer cells | 389 | 0.4816263866878% | — | — | — |
| Cycling T cells | 369 | 0.45686410459588% | — | — | — |
| Hematopoietic stem and progenitor cells | 239 | 0.29590927099842% | — | — | — |
| Mast cells | 131 | 0.16219294770206% | — | — | — |
| Common lymphoid progenitors | 126 | 0.15600237717908% | — | — | — |
| Common myeloid progenitors | 56 | 0.069334389857369% | — | — | — |
| Natural killer T cells | 50 | 0.061905705229794% | — | — | — |
| Basophils | 17 | 0.02104793977813% | — | — | — |
| Endothelial cells | 667 | 0.82582210776545% | — | — | — |
19 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | B cells | 22773 | 28.1956 | Immune cells | #2E7D32 |
| celltype | Monocytes | 22473 | 27.8241 | Immune cells | #7E57C2 |
| celltype | T cells | 12837 | 15.8937 | Immune cells | #8D6E63 |
| celltype | Neutrophils | 9694 | 12.0023 | Immune cells | #FF8A65 |
| celltype | Macrophages | 3249 | 4.0226 | Immune cells | #EC407A |
| celltype | Plasma B cells | 2859 | 3.5398 | Immune cells | #E91E63 |
| celltype | Dendritic cells | 1993 | 2.4676 | Immune cells | #9CCC65 |
| celltype | Cycling B cells | 1275 | 1.5786 | Immune cells | #EF5350 |
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