ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
154,958
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
41
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 158 | 0.10196311258535% | — | — | — |
| Schwann cells | 42 | 0.027104118535345% | — | — | — |
| Enteric neurons | 20 | 0.012906723112069% | — | — | — |
| T cells | 23,830 | 15.37836058803% | — | — | — |
| B cells | 10,729 | 6.9238116134695% | — | — | — |
| Dendritic cells | 5,528 | 3.5674182681759% | — | — | — |
| Plasma B cells | 5,278 | 3.406084229275% | — | — | — |
| Monocytes | 2,968 | 1.9153577098311% | — | — | — |
| Kupffer cells | 2,785 | 1.7972611933556% | — | — | — |
| Macrophages | 2,589 | 1.6707753068573% | — | — | — |
| Natural killer T cells | 1,968 | 1.2700215542276% | — | — | — |
| Mast cells | 1,316 | 0.84926238077415% | — | — | — |
| Cycling T cells | 473 | 0.30524400160043% | — | — | — |
| Goblet cells | 450 | 0.29040127002155% | — | — | — |
| Pancreas islet cells | 418 | 0.26975051304224% | — | — | — |
| Cycling B cells | 173 | 0.1116431549194% | — | — | — |
| Hepatocytes | 10,228 | 6.6004981995121% | — | — | — |
| Pancreas ductal cells | 10,160 | 6.5566153409311% | — | — | — |
| Acinar cells | 8,823 | 5.6938009008893% | — | — | — |
| Basal cells | 6,300 | 4.0656177803018% | — | — | — |
| Serous cells | 3,993 | 2.5768272693246% | — | — | — |
| Cycling epithelial cells | 3,790 | 2.4458240297371% | — | — | — |
| Enterocytes | 3,564 | 2.2999780585707% | — | — | — |
| Mucous cells | 2,610 | 1.684327366125% | — | — | — |
| Glandular cells | 2,037 | 1.3145497489642% | — | — | — |
| Squamous cells | 988 | 0.63759212173621% | — | — | — |
| Cycling glandular cells | 314 | 0.20263555285948% | — | — | — |
| Cholangiocytes | 224 | 0.14455529885517% | — | — | — |
| Cycling gastric epithelial cell | 217 | 0.14003794576595% | — | — | — |
| Endocrine cells | 190 | 0.12261386956466% | — | — | — |
| Neuroendocrine cells | 102 | 0.065824287871552% | — | — | — |
| Other stromal cells | 12,446 | 8.0318537926406% | — | — | — |
| Fibroblasts | 4,481 | 2.8917513132591% | — | — | — |
| Stellate cells | 941 | 0.60726132242285% | — | — | — |
| Adipocytes | 212 | 0.13681126498793% | — | — | — |
| Pericytes | 56 | 0.036138824713793% | — | — | — |
| Smooth muscle cells | 8,264 | 5.3330579899069% | — | — | — |
| Type II myonuclei | 6,841 | 4.4147446404832% | — | — | — |
| Satellite cells | 253 | 0.16327004736767% | — | — | — |
| Endothelial cells | 8,432 | 5.4414744640483% | — | — | — |
| Intercalated cells | 767 | 0.49497283134785% | — | — | — |
41 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 23830 | 15.3784 | Immune cells | #8D6E63 |
| celltype | Other stromal cells | 12446 | 8.0319 | Stromal cells | #008B8B |
| celltype | B cells | 10729 | 6.9238 | Immune cells | #2E7D32 |
| celltype | Hepatocytes | 10228 | 6.6005 | Epithelial cells | #66BB6A |
| celltype | Pancreas ductal cells | 10160 | 6.5566 | Epithelial cells | #FFEE58 |
| celltype | Acinar cells | 8823 | 5.6938 | Epithelial cells | #4CAF50 |
| celltype | Endothelial cells | 8432 | 5.4415 | Endothelial cells | #26C6DA |
| celltype | Smooth muscle cells | 8264 | 5.3331 | Muscle cells | #FF7043 |
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