ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
60,186
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
23
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 1,294 | 2.150001661516% | — | — | — |
| Microglia | 788 | 1.3092745821287% | — | — | — |
| B cells | 5,204 | 8.6465290931446% | — | — | — |
| Natural killer T cells | 4,932 | 8.1945967500748% | — | — | — |
| Macrophages | 3,557 | 5.9100122952182% | — | — | — |
| Dendritic cells | 2,679 | 4.4512012760443% | — | — | — |
| T cells | 1,075 | 1.7861296647061% | — | — | — |
| Monocytes | 155 | 0.25753497491111% | — | — | — |
| Follicular cells | 14,429 | 23.974013890273% | — | — | — |
| Corticotropes | 4,157 | 6.9069218755192% | — | — | — |
| Fasciculata cells | 4,082 | 6.7823081779816% | — | — | — |
| Gonadotropes | 1,434 | 2.3826138969195% | — | — | — |
| Somatotropes | 1,040 | 1.7279766058552% | — | — | — |
| Melanotropes | 846 | 1.4056425082245% | — | — | — |
| Lactotropes | 767 | 1.2743827468182% | — | — | — |
| Thyrotropes | 612 | 1.0168477719071% | — | — | — |
| Adipocytes | 1,579 | 2.623533712159% | — | — | — |
| Fibroblasts | 1,238 | 2.0569567673545% | — | — | — |
| Folliculostellate cells | 1,172 | 1.9472967135214% | — | — | — |
| Other stromal cells | 980 | 1.6282856478251% | — | — | — |
| Adipocyte progenitor cells | 709 | 1.1780148207224% | — | — | — |
| Smooth muscle cells | 171 | 0.2841192303858% | — | — | — |
| Endothelial cells | 7,286 | 12.105805336789% | — | — | — |
23 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Follicular cells | 14429 | 23.974 | Epithelial cells | #008B8B |
| celltype | Endothelial cells | 7286 | 12.1058 | Endothelial cells | #26C6DA |
| celltype | B cells | 5204 | 8.6465 | Immune cells | #2E7D32 |
| celltype | Natural killer T cells | 4932 | 8.1946 | Immune cells | #FF1493 |
| celltype | Corticotropes | 4157 | 6.9069 | Epithelial cells | #1E90FF |
| celltype | Fasciculata cells | 4082 | 6.7823 | Epithelial cells | #4B0082 |
| celltype | Macrophages | 3557 | 5.91 | Immune cells | #EC407A |
| celltype | Dendritic cells | 2679 | 4.4512 | Immune cells | #9CCC65 |
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