ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
28,318
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
16
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Monocytes | 1,011 | 3.5701673847023% | — | — | — |
| T cells | 630 | 2.2247333851261% | — | — | — |
| Macrophages | 503 | 1.7762553852673% | — | — | — |
| Urothelial cells | 8,669 | 30.613037643901% | — | — | — |
| Proximal tubule cells | 6,309 | 22.279115756762% | — | — | — |
| Cycling intermediate cells | 1,052 | 3.7149516208772% | — | — | — |
| Connecting tubule cells | 882 | 3.1146267391765% | — | — | — |
| Distal convoluted tubule cells | 621 | 2.1929514796243% | — | — | — |
| Podocytes | 350 | 1.2359629917367% | — | — | — |
| Descending limb of loop of Henle cells | 146 | 0.51557313369588% | — | — | — |
| Fibroblasts | 967 | 3.4147891800268% | — | — | — |
| Smooth muscle cells | 3,636 | 12.839889822728% | — | — | — |
| Endothelial cells | 1,409 | 4.9756338724486% | — | — | — |
| Ascending loop of Henle cells | 1,123 | 3.9656755420581% | — | — | — |
| Intercalated cells | 724 | 2.5566777314782% | — | — | — |
| Principal cells | 286 | 1.0099583303906% | — | — | — |
16 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Urothelial cells | 8669 | 30.613 | Epithelial cells | #D4E157 |
| celltype | Proximal tubule cells | 6309 | 22.2791 | Epithelial cells | #26A69A |
| celltype | Smooth muscle cells | 3636 | 12.8399 | Muscle cells | #FF7043 |
| celltype | Endothelial cells | 1409 | 4.9756 | Endothelial cells | #26C6DA |
| celltype | Ascending loop of Henle cells | 1123 | 3.9657 | Other | #26A69A |
| celltype | Cycling intermediate cells | 1052 | 3.715 | Epithelial cells | #00BFFF |
| celltype | Monocytes | 1011 | 3.5702 | Immune cells | #7E57C2 |
| celltype | Fibroblasts | 967 | 3.4148 | Stromal cells | #FFA726 |
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