ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys01tis19
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP202_tis/sys01tis19/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
11,581
Cells represented in this release
🧬
Total Genes
16,423
Genes represented in the source matrix
🔷
Cell Types
12
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Rod cells | 1,937 | 16.725671358259% | — | — | — |
| Amacrine cells | 1,006 | 8.686641913479% | — | — | — |
| Bipolar cells | 981 | 8.4707710905794% | — | — | — |
| Melanocytes | 658 | 5.6817200587169% | — | — | — |
| Muller cells | 354 | 3.056730852258% | — | — | — |
| Cone cells | 246 | 2.1241688973318% | — | — | — |
| Macrophages | 1,691 | 14.601502460927% | — | — | — |
| Retinal pigmentary epithelial cells | 1,813 | 15.654952076677% | — | — | — |
| Surface epithelial cells | 43 | 0.37129781538727% | — | — | — |
| Fibroblasts | 1,681 | 14.515154131768% | — | — | — |
| Smooth muscle cells | 763 | 6.5883775148951% | — | — | — |
| Endothelial cells | 408 | 3.5230118297211% | — | — | — |
12 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Rod cells | 1937 | 16.7257 | Neural cells | #FF00FF |
| celltype | Retinal pigmentary epithelial cells | 1813 | 15.655 | Epithelial cells | #FF00FF |
| celltype | Macrophages | 1691 | 14.6015 | Immune cells | #EC407A |
| celltype | Fibroblasts | 1681 | 14.5152 | Stromal cells | #FFA726 |
| celltype | Amacrine cells | 1006 | 8.6866 | Neural cells | #4b0082 |
| celltype | Bipolar cells | 981 | 8.4708 | Neural cells | #663399 |
| celltype | Smooth muscle cells | 763 | 6.5884 | Muscle cells | #FF7043 |
| celltype | Melanocytes | 658 | 5.6817 | Neural cells | #8D6E63 |
First 8 rows