ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP2213
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP2213/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
507,321
Cells represented in this release
🧬
Total Genes
17,308
Genes represented in the source matrix
🔷
Cell Types
99
Annotated cell-type groups
🫀
Tissues
44
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 48,940 | 9.6467522535042% | — | — | — |
| Oligodendrocytes | 32,847 | 6.4745989225756% | — | — | — |
| Inhibitory neurons | 24,057 | 4.7419681030354% | — | — | — |
| Microglia | 15,747 | 3.1039519357567% | — | — | — |
| Astrocytes | 14,391 | 2.8366655431177% | — | — | — |
| Oligodendrocyte progenitor cells | 10,463 | 2.0624023054437% | — | — | — |
| Granule cells | 4,519 | 0.89075752827106% | — | — | — |
| Chromaffin cells | 2,775 | 0.54699095838729% | — | — | — |
| Schwann cells | 1,222 | 0.24087313554929% | — | — | — |
| Melanocytes | 830 | 0.16360450286899% | — | — | — |
| Glial cells | 712 | 0.14034506752135% | — | — | — |
| Rod cells | 425 | 0.083773390023279% | — | — | — |
| Muller cells | 354 | 0.06977830604292% | — | — | — |
| Enteric glial cells | 313 | 0.061696637828909% | — | — | — |
| Cone cells | 254 | 0.050066920155089% | — | — | — |
| Bipolar cells | 250 | 0.049278464719576% | — | — | — |
| Amacrine cells | 200 | 0.039422771775661% | — | — | — |
| Purkinje cells | 101 | 0.019908499746709% | — | — | — |
| Ganglion cells | 79 | 0.015571994851386% | — | — | — |
| Enteric neurons | 58 | 0.011432603814942% | — | — | — |
| Radial glial cells | 34 | 0.0067018712018623% | — | — | — |
| B cells | 40,545 | 7.9919814082208% | — | — | — |
| T cells | 35,208 | 6.9399847433873% | — | — | — |
| Macrophages | 10,646 | 2.0984741416184% | — | — | — |
| Monocytes | 9,571 | 1.8865767433242% | — | — | — |
| Neutrophils | 6,043 | 1.1911590492016% | — | — | — |
| Plasma B cells | 4,426 | 0.87242593939537% | — | — | — |
| Natural killer T cells | 3,288 | 0.64811036799186% | — | — | — |
| Dendritic cells | 3,047 | 0.60060592800219% | — | — | — |
| Goblet cells | 2,649 | 0.52215461216863% | — | — | — |
| Natural killer cells | 2,388 | 0.47070789500139% | — | — | — |
| Cycling B cells | 2,327 | 0.45868394960981% | — | — | — |
| Pancreas islet cells | 1,738 | 0.34258388673049% | — | — | — |
| Mast cells | 671 | 0.13226339930734% | — | — | — |
| Kupffer cells | 502 | 0.098951157156909% | — | — | — |
| Cycling T cells | 489 | 0.096388676991491% | — | — | — |
| Erythroid cells | 337 | 0.066427370441988% | — | — | — |
| Common myeloid progenitors | 68 | 0.013403742403725% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 13 | 0.002562480165418% | — | — | — |
| Proximal tubule cells | 12,628 | 2.4891538099152% | — | — | — |
| Hepatocytes | 8,718 | 1.7184386217011% | — | — | — |
| Acinar cells | 8,292 | 1.6344681178189% | — | — | — |
| Follicular cells | 6,112 | 1.2047599054642% | — | — | — |
| Fasciculata cells | 4,916 | 0.96901173024574% | — | — | — |
| Cycling epithelial cells | 4,768 | 0.93983887913175% | — | — | — |
| Mucous cells | 4,687 | 0.92387265656261% | — | — | — |
| Urothelial cells | 4,368 | 0.86099333558043% | — | — | — |
| Enterocytes | 3,551 | 0.69995131287686% | — | — | — |
| Glomerulosa cells | 3,247 | 0.64002869977785% | — | — | — |
| Glandular cells | 3,124 | 0.61578369513582% | — | — | — |
| Peritubular myoid cells | 2,344 | 0.46203488521074% | — | — | — |
| Pancreas ductal cells | 2,176 | 0.42891975691919% | — | — | — |
| Ependymal cells | 2,030 | 0.40014113352296% | — | — | — |
| Sertoli cells | 1,970 | 0.38831430199026% | — | — | — |
| Retinal pigmentary epithelial cells | 1,797 | 0.35421360440431% | — | — | — |
| Keratinocytes | 1,624 | 0.32011290681837% | — | — | — |
| Serous cells | 1,536 | 0.30276688723707% | — | — | — |
| Distal convoluted tubule cells | 1,531 | 0.30178131794268% | — | — | — |
| Alveolar type 2 cells | 696 | 0.1371912457793% | — | — | — |
| Descending limb of loop of Henle cells | 561 | 0.11058087483073% | — | — | — |
| Cycling gastric epithelial cell | 435 | 0.085744528612062% | — | — | — |
| Cycling glandular cells | 198 | 0.039028544057904% | — | — | — |
| Chief cells | 180 | 0.035480494598095% | — | — | — |
| Taste cells | 172 | 0.033903583727068% | — | — | — |
| Corticotropes | 154 | 0.030355534267259% | — | — | — |
| Choroid plexus | 134 | 0.026413257089693% | — | — | — |
| Podocytes | 123 | 0.024245004642031% | — | — | — |
| Alveolar type 1 cells | 74 | 0.014586425556994% | — | — | — |
| Cholangiocytes | 63 | 0.012418173109333% | — | — | — |
| Lactotropes | 52 | 0.010249920661672% | — | — | — |
| Basal cells | 46 | 0.009067237508402% | — | — | — |
| Thyrotropes | 42 | 0.0082787820728888% | — | — | — |
| Cycling basal cells | 33 | 0.006504757342984% | — | — | — |
| Parietal cells | 25 | 0.0049278464719576% | — | — | — |
| Fibroblasts | 19,947 | 3.9318301430455% | — | — | — |
| Other stromal cells | 10,624 | 2.0941376367231% | — | — | — |
| Epineurial cells | 7,838 | 1.5449784258881% | — | — | — |
| Adipocytes | 7,666 | 1.5110748421611% | — | — | — |
| Endoneurial cells | 5,984 | 1.1795293315278% | — | — | — |
| Homeostatic chondrocytes | 4,673 | 0.92111306253831% | — | — | — |
| Pericytes | 2,448 | 0.48253472653409% | — | — | — |
| Mesenchymal cells | 1,875 | 0.36958848539682% | — | — | — |
| Mesothelial cells | 1,748 | 0.34455502531928% | — | — | — |
| Leydig cells | 1,405 | 0.27694497172402% | — | — | — |
| Perineurial cells | 653 | 0.12871534984753% | — | — | — |
| Stellate cells | 485 | 0.095600221555977% | — | — | — |
| Tendon cells | 373 | 0.073523469361607% | — | — | — |
| Folliculostellate cells | 50 | 0.0098556929439152% | — | — | — |
| Adipocyte progenitor cells | 32 | 0.0063076434841057% | — | — | — |
| Type II myonuclei | 31,037 | 6.1178228380059% | — | — | — |
| Smooth muscle cells | 14,477 | 2.8536173349812% | — | — | — |
| Type I myonuclei | 4,676 | 0.92170440411495% | — | — | — |
| Cardiomyocytes | 2,184 | 0.43049666779022% | — | — | — |
| Satellite cells | 1,643 | 0.32385807013705% | — | — | — |
| Spermatogonia | 624 | 0.12299904794006% | — | — | — |
| Endothelial cells | 17,516 | 3.4526463521124% | — | — | — |
| Ascending loop of Henle cells | 3,081 | 0.60730779920405% | — | — | — |
| Principal cells | 1,072 | 0.21130605671754% | — | — | — |
| Intercalated cells | 276 | 0.054403425050412% | — | — | — |
99 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Excitatory neurons | 48940 | 9.6468 | Neural cells | #26C6DA |
| celltype | B cells | 40545 | 7.992 | Immune cells | #2E7D32 |
| celltype | T cells | 35208 | 6.94 | Immune cells | #78909C |
| celltype | Oligodendrocytes | 32847 | 6.4746 | Neural cells | #EF5350 |
| celltype | Type II myonuclei | 31037 | 6.1178 | Muscle cells | #BC8F8F |
| celltype | Inhibitory neurons | 24057 | 4.742 | Neural cells | #42A5F5 |
| celltype | Fibroblasts | 19947 | 3.9318 | Stromal cells | #F44336 |
| celltype | Endothelial cells | 17516 | 3.4526 | Endothelial cells | #FF8A65 |
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