ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP2213_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
101,434
Cells represented in this release
🧬
Total Genes
17,308
Genes represented in the source matrix
🔷
Cell Types
41
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 313 | 0.30857503401226% | — | — | — |
| Schwann cells | 225 | 0.22181911390658% | — | — | — |
| Enteric neurons | 58 | 0.057180038251474% | — | — | — |
| T cells | 10,908 | 10.753790642191% | — | — | — |
| B cells | 9,366 | 9.2335903148846% | — | — | — |
| Plasma B cells | 3,981 | 3.9247195220537% | — | — | — |
| Goblet cells | 2,649 | 2.6115503677268% | — | — | — |
| Macrophages | 1,746 | 1.7213163239151% | — | — | — |
| Pancreas islet cells | 1,738 | 1.7134294220873% | — | — | — |
| Monocytes | 1,156 | 1.1396573141156% | — | — | — |
| Dendritic cells | 1,030 | 1.0154386103279% | — | — | — |
| Natural killer T cells | 992 | 0.9779758266459% | — | — | — |
| Kupffer cells | 502 | 0.49490308969379% | — | — | — |
| Cycling B cells | 349 | 0.34406609223732% | — | — | — |
| Cycling T cells | 318 | 0.31350434765463% | — | — | — |
| Mast cells | 94 | 0.092671096476527% | — | — | — |
| Hepatocytes | 8,718 | 8.5947512668336% | — | — | — |
| Acinar cells | 8,292 | 8.1747737445038% | — | — | — |
| Cycling epithelial cells | 4,768 | 4.7005934893625% | — | — | — |
| Mucous cells | 4,687 | 4.6207386083562% | — | — | — |
| Enterocytes | 3,551 | 3.5007985488101% | — | — | — |
| Glandular cells | 3,124 | 3.0798351637518% | — | — | — |
| Pancreas ductal cells | 2,176 | 2.1452372971587% | — | — | — |
| Serous cells | 1,536 | 1.5142851509356% | — | — | — |
| Cycling gastric epithelial cell | 435 | 0.42885028688605% | — | — | — |
| Cycling glandular cells | 198 | 0.19520082023779% | — | — | — |
| Chief cells | 180 | 0.17745529112526% | — | — | — |
| Taste cells | 172 | 0.16956838929747% | — | — | — |
| Cholangiocytes | 63 | 0.062109351893842% | — | — | — |
| Basal cells | 46 | 0.04534968550979% | — | — | — |
| Cycling basal cells | 33 | 0.032533470039632% | — | — | — |
| Parietal cells | 25 | 0.024646568211842% | — | — | — |
| Other stromal cells | 8,853 | 8.7278427351776% | — | — | — |
| Stellate cells | 485 | 0.47814342330974% | — | — | — |
| Adipocytes | 242 | 0.23857878029063% | — | — | — |
| Pericytes | 202 | 0.19914427115168% | — | — | — |
| Type II myonuclei | 6,279 | 6.1902320720863% | — | — | — |
| Smooth muscle cells | 4,934 | 4.8642467022892% | — | — | — |
| Type I myonuclei | 1,500 | 1.4787940927105% | — | — | — |
| Satellite cells | 440 | 0.43377960052842% | — | — | — |
| Endothelial cells | 5,070 | 4.9983240333616% | — | — | — |
41 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 10908 | 10.7538 | Immune cells | #78909C |
| celltype | B cells | 9366 | 9.2336 | Immune cells | #2E7D32 |
| celltype | Other stromal cells | 8853 | 8.7278 | Stromal cells | #008B8B |
| celltype | Hepatocytes | 8718 | 8.5948 | Epithelial cells | #E91E63 |
| celltype | Acinar cells | 8292 | 8.1748 | Epithelial cells | #4CAF50 |
| celltype | Type II myonuclei | 6279 | 6.1902 | Muscle cells | #BC8F8F |
| celltype | Endothelial cells | 5070 | 4.9983 | Endothelial cells | #FF8A65 |
| celltype | Smooth muscle cells | 4934 | 4.8642 | Muscle cells | #26A69A |
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