ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP2213_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
34,657
Cells represented in this release
🧬
Total Genes
17,308
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 2,775 | 8.0070404247338% | — | — | — |
| Macrophages | 968 | 2.793086533745% | — | — | — |
| Natural killer T cells | 671 | 1.9361168018005% | — | — | — |
| Dendritic cells | 630 | 1.8178145829125% | — | — | — |
| B cells | 204 | 0.58862567446692% | — | — | — |
| Monocytes | 96 | 0.2770003173962% | — | — | — |
| T cells | 55 | 0.15869809850824% | — | — | — |
| Follicular cells | 6,112 | 17.635686874225% | — | — | — |
| Fasciculata cells | 4,916 | 14.184724586664% | — | — | — |
| Glomerulosa cells | 3,247 | 9.3689586519318% | — | — | — |
| Corticotropes | 154 | 0.44435467582307% | — | — | — |
| Lactotropes | 52 | 0.15004183858961% | — | — | — |
| Thyrotropes | 42 | 0.12118763886084% | — | — | — |
| Adipocytes | 6,698 | 19.32654297833% | — | — | — |
| Fibroblasts | 3,849 | 11.105981475604% | — | — | — |
| Mesothelial cells | 1,317 | 3.8000981042791% | — | — | — |
| Other stromal cells | 301 | 0.86851141183599% | — | — | — |
| Folliculostellate cells | 50 | 0.14427099864385% | — | — | — |
| Adipocyte progenitor cells | 32 | 0.092333439132066% | — | — | — |
| Smooth muscle cells | 167 | 0.48186513547047% | — | — | — |
| Endothelial cells | 2,321 | 6.6970597570476% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Adipocytes | 6698 | 19.3265 | Stromal cells | #42A5F5 |
| celltype | Follicular cells | 6112 | 17.6357 | Epithelial cells | #008B8B |
| celltype | Fasciculata cells | 4916 | 14.1847 | Epithelial cells | #4B0082 |
| celltype | Fibroblasts | 3849 | 11.106 | Stromal cells | #F44336 |
| celltype | Glomerulosa cells | 3247 | 9.369 | Epithelial cells | #2F4F4F |
| celltype | Chromaffin cells | 2775 | 8.007 | Neural cells | #EC407A |
| celltype | Endothelial cells | 2321 | 6.6971 | Endothelial cells | #FF8A65 |
| celltype | Mesothelial cells | 1317 | 3.8001 | Stromal cells | #FFCA28 |
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